Locus 9718

Sequence ID 3R_DroMel_CAF1
Location 25,706,033 – 25,706,134
Length 101
Max. P 0.847796
window15522

overview

Window 2

Location 25,706,033 – 25,706,134
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 89.46
Mean single sequence MFE -26.90
Consensus MFE -21.28
Energy contribution -22.12
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.79
SVM decision value 0.78
SVM RNA-class probability 0.847796
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25706033 101 - 27905053
AUUGCAAUCGGCAUCGGGCCCAAAAGCUCGCACAUGCAACGUGCAAUGUGCAACAUGCAACAAGCAACAUGCAGCGAGCAGCAAGCAGCAAGCCACA-CUCG
.((((....(((.....))).....((((((...((((...(((....(((.....)))....)))...)))))))))).))))((.....))....-.... ( -30.70)
>DroSec_CAF1 10654 101 - 1
AUUGCAAUCGGCAUCGGGCCCAAAAGCUCGCACAUGCAACGUGCAAUGUGCAACAUGCAACAAGCAACAUGCAGCGAGCAGCAAGCAGCAAGCCACA-CUCG
.((((....(((.....))).....((((((...((((...(((....(((.....)))....)))...)))))))))).))))((.....))....-.... ( -30.70)
>DroSim_CAF1 10877 94 - 1
AUUGCAAUCGGCAUCGGGCCCAAAAGAUCGCACAUGCAACGUGAAAUGUGCAACAUGCA-------ACAUGCAGCGAGCAGCAAGCAGCAAGCCACA-CUCG
.((((....(((.....))).........((...(((..(((...((((((.....)).-------))))...))).)))....)).))))......-.... ( -21.00)
>DroEre_CAF1 11852 95 - 1
AUUGCAAUCGGCAUCGGGCCCAAAAGCUCGCACAUGCAACGUGCAAUGUGCAACAUGCA-------ACAUGCAGCAAGCAGCCAGCAGCAAGCCACAACGCG
.((((.....((((.((((......))))((((((((.....)).))))))...)))).-------...(((.((.....))..)))))))((......)). ( -27.40)
>DroYak_CAF1 11002 88 - 1
AUUGCAAUCGGCAUCGGGCCCAAAAGCUCGCACAUGCAACGUGCAAUGUGCAACAUGCA-------ACAUACAGCAGGC-------AGCAAGCCACAACUCG
.(((((.........((((......))))((((((((.....)).))))))....))))-------).........(((-------.....)))........ ( -24.70)
>consensus
AUUGCAAUCGGCAUCGGGCCCAAAAGCUCGCACAUGCAACGUGCAAUGUGCAACAUGCA_______ACAUGCAGCGAGCAGCAAGCAGCAAGCCACA_CUCG
.((((....(((.....))).....((((((((((((.....)).))))))....((((..........))))..))))........))))........... (-21.28 = -22.12 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:32 2006