Locus 9717

Sequence ID 3R_DroMel_CAF1
Location 25,705,081 – 25,705,180
Length 99
Max. P 0.758315
window15521

overview

Window 1

Location 25,705,081 – 25,705,180
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.30
Mean single sequence MFE -39.55
Consensus MFE -20.34
Energy contribution -20.45
Covariance contribution 0.11
Combinations/Pair 1.23
Mean z-score -2.22
Structure conservation index 0.51
SVM decision value 0.49
SVM RNA-class probability 0.758315
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25705081 99 - 27905053
CCACGUUGUCCGCAUCCACAUCCUCGGUG---UCGGCAUCAUCUAUAGAGUUGUAGCGCCUGCGAGAUGCCACGCUUUUGGGCGUGGAAGUGGUGGGUGGCG
...(((..(((((.(((((..((..((((---(.((((((.((....)).((((((...)))))))))))))))))...))..)))))....)))))..))) ( -43.60)
>DroPse_CAF1 8396 102 - 1
CUACGUUGUCUGCAUCCACGUCCUCUGCAUCAUCGGCAUCAUCAAUGGAGUUGUAGCGAUGACGUGAUAUCACUUUCCUGGGCGUAGAUGUUGUUGUUGGUG
...((....(.(((((.((((((......(((((((((...((....))..)))..)))))).(((....)))......)))))).))))).)....))... ( -26.60)
>DroEre_CAF1 10823 99 - 1
CCACGUUGUCCGCAUCCACGUCCUCGGUG---UCGGCAUCAUCUAUGGAGUUGUAGCGCCUGCGUGAUGCCAAGUUCUUGGGCGUGGAUGUGGUGGGUGGGG
((((.(...((((((((((((((..((..---..((((((((.((.((.((....)).)))).))))))))....))..)))))))))))))).).)))).. ( -51.00)
>DroYak_CAF1 9962 99 - 1
CCACGUUGUCCGCAUCCACGUCCUCGGUA---UCGGCAUCAUCUAUGGAGUUAUAGCGCCUGCGUGAUGCCAAGCUCUUGGGCGUGGAAGUGGUGGGUGGAG
((((.(...((((.(((((((((..(((.---..((((((((.((.((.((....)).)))).))))))))..)))...))))))))).)))).).)))).. ( -47.10)
>DroAna_CAF1 9701 96 - 1
CUACGUUGUCCGCAUCCACAUCCUCUGUA---UCGGGAUCUUCAAUGGAGUUGAAGCGGCGACGAGGAGUCAGCUUCUUGGGUGUGGAAGUGG---ACAGGG
...(.((((((((.(((((((((((((..---.)))).........((((((((..((....)).....))))))))..))))))))).))))---)))).) ( -41.70)
>DroPer_CAF1 8405 102 - 1
CUACAUUGUCUGCAUCCACGUCCUCUGCAUCAUCGGCAUCAUCAAUGGAGUUGUAGCGAUGACGUGAUAUCACUUUCCUGGGCGUAGAUGUUGUUGUUGGUG
...((....(.(((((.((((((......(((((((((...((....))..)))..)))))).(((....)))......)))))).))))).)....))... ( -27.30)
>consensus
CCACGUUGUCCGCAUCCACGUCCUCGGUA___UCGGCAUCAUCAAUGGAGUUGUAGCGCCGACGUGAUGCCACGUUCUUGGGCGUGGAAGUGGUGGGUGGGG
(((......((((.(((((((((...(......)((.(((((.......((....))......))))).))........))))))))).))))....))).. (-20.34 = -20.45 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:31 2006