| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,704,963 – 25,705,078 |
| Length | 115 |
| Max. P | 0.545845 |
| Location | 25,704,963 – 25,705,078 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.07 |
| Mean single sequence MFE | -41.42 |
| Consensus MFE | -24.03 |
| Energy contribution | -24.03 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25704963 115 + 27905053 AUCAGCGUGGGCAACACGCCGCAAAAGAAGCAAGCCUUCCACGAGAUGCUCAUCUCGGAGCUGGCUGCCAUGCGGAACAAGUCCUGCUCCCUGGAGCAGCUACCCACCGCCAAGU----- ....(((((((.......(((((......(((.(((..(..((((((....))))))..)..))))))..)))))........((((((....))))))...)))).))).....----- ( -44.70) >DroVir_CAF1 13232 117 + 1 GUCAGCGCUGGCAAUACGCCGGAAAAGAAGCCAGCUUUUCAUGAGCUGCUCAUCUCGGAGCUGGCGGCCAUGCGCAAUCGUGCCUGCUCCCUGGAACAGUUGCCCAC---CAAGUGGCAG ((((((((((((....((((((...((((((.(((((.....))))))))..))).....)))))))))).))))....((..(((.((....)).)))..))....---....)))).. ( -42.60) >DroPse_CAF1 8248 117 + 1 AUUAGCGUGGGGAAUACUCCUGAGAAGAAGCAGGCCUUCCACGAGCUGCUCAUUUCCGAGUUGGCUGCUAUGCGCAAUAAGUCCUGCUCUCUGGAGCAGCUUCCCAC---UAAAUCUUUG ......(((((((.(.((((.((((....(((((.(((.....((((((((......))).)))))((.....))...))).))))))))).)))).)..)))))))---.......... ( -39.00) >DroMoj_CAF1 12987 115 + 1 GUCAGUGCCGGCAACACGCCCGAGAAGAAGCAUGCCUUCCACGAGCUGCUCAUCUCGGAGCUGGCGGCUAUGCGUAAUCGUGCCUGCUCGCUGGAACAGUUGCCCAC---UAAGUGGC-- ...((((..((((((....((((((.((.(((.(((......).))))))).))))))(((.((((((...(((....)))))).))).)))......)))))))))---).......-- ( -42.50) >DroAna_CAF1 9580 117 + 1 AUCAGUGUGGGUAAUACCCCGGAAAAGAAGCCGGCUUUCCACGAGAUGCUCAUCUCCGAGUUGGCUGCCAUGCGGAAUAAGUCCUGUUCCAUGGAACAGUUGCCCAC---CAAAUCGCUA ....(.((((((((....(((.(.....(((((((((.....(((((....))))).)))))))))....).)))........((((((....))))))))))))))---)......... ( -40.70) >DroPer_CAF1 8257 117 + 1 AUUAGCGUGGGGAAUACUCCUGAGAAGAAGCAGGCCUUCCACGAGCUGCUCAUUUCCGAGUUGGCUGCUAUGCGCAAUAAGUCCUGCUCUCUGGAGCAGCUUCCCAC---UAAAUCUUUG ......(((((((.(.((((.((((....(((((.(((.....((((((((......))).)))))((.....))...))).))))))))).)))).)..)))))))---.......... ( -39.00) >consensus AUCAGCGUGGGCAAUACGCCGGAAAAGAAGCAGGCCUUCCACGAGCUGCUCAUCUCCGAGCUGGCUGCCAUGCGCAAUAAGUCCUGCUCCCUGGAACAGCUGCCCAC___CAAAUCGCUG ......(((((((................((.((((...........((((......)))).))))))...............((((((....)))))).)))))))............. (-24.03 = -24.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:30 2006