Locus 9711

Sequence ID 3R_DroMel_CAF1
Location 25,687,172 – 25,687,274
Length 102
Max. P 0.969434
window15510

overview

Window 0

Location 25,687,172 – 25,687,274
Length 102
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 81.13
Mean single sequence MFE -34.49
Consensus MFE -23.31
Energy contribution -24.07
Covariance contribution 0.76
Combinations/Pair 1.14
Mean z-score -2.47
Structure conservation index 0.68
SVM decision value 1.64
SVM RNA-class probability 0.969434
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25687172 102 - 27905053
UAUAUUACCCGUUGAAUAAGGUGUGGCCAGCUUGCGUUCGUAACAG-----------CUCGGUAAAAUGUUAGCUUGUGGCUUCGCGCACACGGUCACACCCUCAUUUUGCAC
..........((.((((..(((((((((((((.(((((((......-----------..)))....)))).)))).(((((.....)).))))))))))))...)))).)).. ( -30.70)
>DroSec_CAF1 3032 102 - 1
UAUAAAACCCGUUGAAUAAGGUGUGGCCAGUUUGUGUUUCUAACAG-----------AUCGUUAAAAUGUUAGCUUGUGGCUUCGCGCAAACGGUCACACCUCCAUUUUGCAC
..........((.((((.((((((((((.((((((((.....((((-----------...(((((....)))))))))......))))))))))))))))))..)))).)).. ( -33.10)
>DroSim_CAF1 3013 102 - 1
UAUAGAACCCGUUGAAUAAGGUGUGGCCAGUUUGCGUUUCUAACAG-----------AUCGGUAAAAUGUUAACUUGUGGCUUUGCGCAAACGGUCACACCCCCAUUUUGCAC
..........((.((((..(((((((((.((((((((.....((((-----------.................))))......)))))))))))))))))...)))).)).. ( -30.93)
>DroEre_CAF1 3564 113 - 1
UAUAGAAACUGUUGAGCGAGGUGUGGCCAGCUUGCGUUUCUAACAGACCACUCUCAGCUUGGCAAACUGUUAGGUUGUGGCUUCGCGCAAACGGUCACACCCUCAUUUUGCAC
.........(((.(((.(((((((((((.(.((((((.......((.((((....((((((((.....))))))))))))))..)))))).)))))))).)))).))).))). ( -37.40)
>DroYak_CAF1 3516 113 - 1
UAUUAAAACUGUUGUAAAAGGUGUGACCAGCCUGCGUUUGUGACACACCACUGUUAGCUCGGCAAACUGUUAGCUUGUGGCUCCGCGCAAACGGUCACACCCUCAUUUUGCAC
............((((((((((((((((.(....)(((((((.....((((.((((((..........))))))..)))).....))))))))))))))))....))))))). ( -40.30)
>consensus
UAUAAAACCCGUUGAAUAAGGUGUGGCCAGCUUGCGUUUCUAACAG___________CUCGGUAAAAUGUUAGCUUGUGGCUUCGCGCAAACGGUCACACCCUCAUUUUGCAC
..........((.((((..(((((((((.(.((((((...(((((......................)))))((.....))...)))))).))))))))))...)))).)).. (-23.31 = -24.07 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:22 2006