Locus 9710

Sequence ID 3R_DroMel_CAF1
Location 25,686,197 – 25,686,299
Length 102
Max. P 0.759287
window15509

overview

Window 9

Location 25,686,197 – 25,686,299
Length 102
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 82.79
Mean single sequence MFE -42.85
Consensus MFE -31.20
Energy contribution -30.93
Covariance contribution -0.27
Combinations/Pair 1.32
Mean z-score -2.12
Structure conservation index 0.73
SVM decision value 0.50
SVM RNA-class probability 0.759287
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25686197 102 + 27905053
CGUCCAGCUGUGUGGUGGACUCCGCCAGCGAGGCGCUGUCCUGCGGAAUCAUGUUCUGCAUCUCCGCCGGCUCCG------GCUCAU---CGCACCUGUCCACCACCACGG
.......(((((((((((((..((....))(((.((.....((((((((...)))))))).....((((....))------))....---.)).))))))))))).))))) ( -43.50)
>DroSec_CAF1 2053 102 + 1
CGUCCAGCUGUGUGGUGGACUCCGCCAACGAGGCGCUGUCCGGCGGAAUCAUGUUCUGCAUCUCUGCCGGCUCCG------GCUCCU---CGCACCUGUCCACCACCACGG
.......(((((((((((((........(((((.((((.((((((((...(((.....))).))))))))...))------)).)))---)).....)))))))).))))) ( -48.82)
>DroSim_CAF1 2035 102 + 1
CGUCCAGCUGUGUGGUGGACUCCGCCAACGAGGCGCUGUCCGGCGGAAUCAUGUUCUGCAUCUCUGCCGGCUCCG------GCUCCU---CGCACCUGUCCACCACCACGG
.......(((((((((((((........(((((.((((.((((((((...(((.....))).))))))))...))------)).)))---)).....)))))))).))))) ( -48.82)
>DroEre_CAF1 2586 108 + 1
CGUCCAGCUGGGUGGUGGAUUCCGCCAACGAGACGCUGUCCGGCGGAAUCAUGUUCUGCAUCUCCGCUGGCUCCUGCUCCUGCUCCU---CGCACCUGUCCACCACAACGG
(((((....))(((((((((........((((.....(.((((((((...(((.....))).)))))))))....((....))..))---)).....))))))))).))). ( -38.02)
>DroWil_CAF1 123 102 + 1
CAUCUAACUGAGUUGUCGUUUCUGUCAGCGAGGAGGUGUCUCCCUGAUUAAUGUGGUGCAUGUCAGCUGGCUCCU------GAUCGUGGGCACUUCUGUCCACAACA---U
...........(((((((.....((((((...((.((((..(((........).)).)))).)).))))))...)------))).(((((((....)))))))))).---. ( -29.90)
>DroYak_CAF1 2545 102 + 1
CGUCCAGCUGGGUGGUGGACUCCGCCAACGAGGCGCUGUCCGGCGGAAUCAUGUUCUGCAUAUCCGCUGGCUCCU------GCUCCU---CGCACCUGUCCACCACCACGG
.......(((((((((((((........(((((.((.(.((((((((...(((.....))).)))))))))....------)).)))---)).....)))))))))).))) ( -48.02)
>consensus
CGUCCAGCUGUGUGGUGGACUCCGCCAACGAGGCGCUGUCCGGCGGAAUCAUGUUCUGCAUCUCCGCCGGCUCCG______GCUCCU___CGCACCUGUCCACCACCACGG
...........(((((((((..((((.....))))..(.((((((((...(((.....))).)))))))))..........................)))))))))..... (-31.20 = -30.93 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:21 2006