| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,679,748 – 25,679,846 |
| Length | 98 |
| Max. P | 0.549172 |
| Location | 25,679,748 – 25,679,846 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 83.56 |
| Mean single sequence MFE | -35.46 |
| Consensus MFE | -26.47 |
| Energy contribution | -26.78 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25679748 98 - 27905053 AAGUAAGCUAUGC----AUACCUUUGAAACAGCGGGUUGGUGAUGGGCACCUCUCCGCCGUACAGGCGAUUGUUGAGCUGGCCAUUCCGACCCAGCGUGGCG ......(((((((----........(......)(((((((.(((((.((.(((..((((.....))))......))).)).)))))))))))).))))))). ( -41.50) >DroVir_CAF1 4814 98 - 1 AAAUUAAAUAAAC----CCACCUUUGAAACAACGGAUUGGCUAUGGGCAAUUCGCCAGCGUAUAAACGAUUAUUUUGCUGGUUAUUCCGACCCAAAGUGUUA .............----..(((((((.......((((((.(....).))))))(((((((.((((....))))..)))))))..........))))).)).. ( -21.60) >DroSec_CAF1 4950 98 - 1 AAGUAAGCUAUGA----AUACCUUUGAAACAGUGGGUUGGUGAUGGGCACCUCUCCGCCGUAAAGGCGAUUGUUGAGCUGGCCAUUCCGACCCAGUGAGGCG ......(((.(.(----(.....)).)..((.((((((((.(((((.((.(((..((((.....))))......))).)).))))))))))))).)).))). ( -36.90) >DroSim_CAF1 5488 98 - 1 AAGUAAGCUGUGC----AUACCUUUGAAACAGCGGGUUGGUGAUGGGCACCUCUCCGCCGUACAGGCGAUUGUUGAGCUGGCCAUUCCGACCCAGCGUGGCG ......((..(((----........(......)(((((((.(((((.((.(((..((((.....))))......))).)).)))))))))))).)))..)). ( -40.10) >DroEre_CAF1 4937 102 - 1 GAGUAAGCCAUGUAUGCAUACCUUUGAAACAGCGGGUUGGUGAUGGGCACCUCCCCGCCGUACAGGCGAUUGUUGAGCUGGCCAUUCCGACCCAGGGUGGCG ......(((((.(..((..............))(((((((.(((((.((.(((..((((.....))))......))).)).)))))))))))).).))))). ( -39.44) >DroYak_CAF1 5546 98 - 1 GCGUAUGCUAUAU----AUACCUUUGGAACAGCGGAUUGGUGAUGGGCACCUCUCCGCCGUACAGGCGAUUGUUGAGCUGGCCAUUCCGACCCAGCGUGGCG ((.((((((....----...((...))......((.((((.(((((.((.(((..((((.....))))......))).)).))))))))).)))))))))). ( -33.20) >consensus AAGUAAGCUAUGC____AUACCUUUGAAACAGCGGGUUGGUGAUGGGCACCUCUCCGCCGUACAGGCGAUUGUUGAGCUGGCCAUUCCGACCCAGCGUGGCG ......(((((............(((...))).(((((((.(((((.((.(((..((((.....))))......))).)).))))))))))))...))))). (-26.47 = -26.78 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:20 2006