Locus 9707

Sequence ID 3R_DroMel_CAF1
Location 25,670,147 – 25,670,240
Length 93
Max. P 0.540483
window15505

overview

Window 5

Location 25,670,147 – 25,670,240
Length 93
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 88.04
Mean single sequence MFE -26.57
Consensus MFE -17.10
Energy contribution -17.77
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.66
Structure conservation index 0.64
SVM decision value 0.01
SVM RNA-class probability 0.540483
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25670147 93 + 27905053
UUGGCGAAAUUAAAUAAAUCGUUGGGAAAUCAUGGGUAUUUUGAUUGGUUUAUUUGG-----------CUAAUUGCGUAAAUCGAAUUGCAAUUGGCCAUCGAA
....(((....(((((((((((..(((.((.....)).)))..).))))))))))((-----------(((((((((..........))))))))))).))).. ( -26.80)
>DroSim_CAF1 18306 93 + 1
UUGGCGAAAUUAAAUAAAUCGUUGGGAAAUCAUGGGUAUUUUGAUUGGUUUAUUUGG-----------CUAAUUGCGUAAAUCGAAUUGCAAUUGGCCUCCGAA
((((.......(((((((((((..(((.((.....)).)))..).))))))))))((-----------(((((((((..........))))))))))).)))). ( -26.40)
>DroYak_CAF1 18084 104 + 1
UUGGCGAAAUUAAAUAAAUCGUUGCGAAAUAAUGGGCAUUUUGAUUGGUUUAUUUGGCUAUGUGCGGGCUAAUUGCGUAAAUCCAAUUGCAUUUGGCCAUCGAA
....(((...(((((((((((...((((((.......))))))..)))))))))))((.....)).((((((.((((..........)))).)))))).))).. ( -26.50)
>consensus
UUGGCGAAAUUAAAUAAAUCGUUGGGAAAUCAUGGGUAUUUUGAUUGGUUUAUUUGG___________CUAAUUGCGUAAAUCGAAUUGCAAUUGGCCAUCGAA
..(((.....(((((((((((((..((.((.....)).))..)).))))))))))).............((((((((..........)))))))))))...... (-17.10 = -17.77 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:17 2006