| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,669,016 – 25,669,115 |
| Length | 99 |
| Max. P | 0.993035 |
| Location | 25,669,016 – 25,669,115 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.45 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -13.26 |
| Energy contribution | -14.78 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.61 |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.993035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25669016 99 - 27905053 ------C---GUCUUCAAAAUGGCCAUUUGUCGAGUUUAAUGACUCAAAGU----GCUUU-AACAU------UCUAAUCGUUCUAAUGAACUCGACAAGUAUCUUAGAGCCAAUUUGCU- ------.---.....((((.(((((((((((((((((((((((.....(((----(....-..)))------)....)))).....))))))))))))))......).)))).))))..- ( -23.70) >DroSec_CAF1 15514 99 - 1 ------C---GUCUUCAAAAUGGCCAUUUGUCGAGUUUAAUGACUCAAAGU----GCUUU-AACAU------UCUAAUCGUUCUAAUGAACUCGACAAGUAUCUUAGAGCCAAUUUGCU- ------.---.....((((.(((((((((((((((((((((((.....(((----(....-..)))------)....)))).....))))))))))))))......).)))).))))..- ( -23.70) >DroSim_CAF1 17218 99 - 1 ------C---GUCUUCAAAAUGGCCAUUUGUCGAGUUUAAUGACUCAAAGU----GCUUC-AACAU------UCUAAUCGUUCUAAUGAACUCGACAAGUAUCUUAGAGCCAAUUUGCU- ------.---.....((((.(((((((((((((((((((((((.....(((----(....-..)))------)....)))).....))))))))))))))......).)))).))))..- ( -23.70) >DroYak_CAF1 16603 112 - 1 UUAUACC---CUUUGCAAAAUGGCCAUGUGUUGAGUUUAAUGACUCAAAGU----GCUUUCCACAUUCUAAUUCUAAUCGUUCUAAUGAACUCGACAAGUAUCUUACAGCCAAUUUGUU- .......---....(((((.((((..(((((((((((....))))))).((----(.....)))...............((((....)))).............)))))))).))))).- ( -22.00) >DroAna_CAF1 15282 109 - 1 UAAAAUCUUUCUUGCCAAUUUGGCUAUUAA--AACCUUUAUUGCCCAAAGGUUAAAUUUU-UAAAU------UCUAAUCGUCUCAACGAACUCCACCAAAAUCCC--AGCCGAUUGCCUC .............((....((((((.....--(((((((.......))))))).......-.....------.....((((....))))................--))))))..))... ( -16.00) >consensus ______C___GUCUUCAAAAUGGCCAUUUGUCGAGUUUAAUGACUCAAAGU____GCUUU_AACAU______UCUAAUCGUUCUAAUGAACUCGACAAGUAUCUUAGAGCCAAUUUGCU_ ...............((((.((((.(((((((((((...(((....((((......))))...)))...........((((....)))))))))))))))........)))).))))... (-13.26 = -14.78 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:16 2006