Locus 9702

Sequence ID 3R_DroMel_CAF1
Location 25,660,740 – 25,660,855
Length 115
Max. P 0.996158
window15498

overview

Window 8

Location 25,660,740 – 25,660,855
Length 115
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 71.48
Mean single sequence MFE -26.05
Consensus MFE -8.17
Energy contribution -8.89
Covariance contribution 0.72
Combinations/Pair 1.33
Mean z-score -2.54
Structure conservation index 0.31
SVM decision value 2.66
SVM RNA-class probability 0.996158
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25660740 115 - 27905053
UCGAAGCCGAUGUCACAUCGAUAAGUAUCGCCAAUA----ACAUCGAUGCAUCGAUGUGCCGUGACAUCACUAAUAUGAACAGCUGAACAACAAUAAUCAUAUUUGGUUAAAAACAAUU
....((((((((((((..((((....))))......----(((((((....)))))))...))))))))...(((((((.....((.....))....))))))).)))).......... ( -29.00)
>DroSim_CAF1 8159 115 - 1
UCGAAGCCGAUGUCACUUCGAUAAAUAUCGCCAAUA----UCAUCGAUGCAUCGAUGUGCCGUGACAUCACUAAUAUGAACAGCUGAACAACAAUAAUCAUAUUUGGUUAAAAACAAUU
....((((((((((((..((((....))))......----.((((((....))))))....))))))))...(((((((.....((.....))....))))))).)))).......... ( -26.50)
>DroEre_CAF1 7043 119 - 1
UCAAAGCCGAUGUACCAUCGAUAAGUAUCGCGAAAAAAACACAUCGAUGCAUCGACGUGCAGUGACAUCACUAAUAUGAACAGCUGAACAACAAUAAUCAUAUUUGGUUAAAAACAAUU
....((((((.((((..(((((..((((((..............))))))))))).))))((((....)))).((((((.....((.....))....)))))))))))).......... ( -21.94)
>DroYak_CAF1 7275 117 - 1
UCAAAGUCGAUGUAACAUCGAUAAGUAUCGCCAA--AGGCACAUCGAUGCAUCGACGAGCCGUGACAUCACUAAUAUGAACAGCUGAACAACAAUAAUCAUAUUUGGUUAAAAACAAUU
.....(((((((...(((((((..((..(.....--.)..)))))))))))))))).(((((((....))).(((((((.....((.....))....))))))).)))).......... ( -27.50)
>DroAna_CAF1 7011 115 - 1
UCCCAAAUGAAUAGUGGUAUUAUGAGGACACCGAUA----AACAGCCACACUGUGCUCUUGGUGUUAUUGUUGUUAACUAUAAAUUCGUCUCUAAUAGCAUAUUUGGUUAAAAACAAUU
..((((((.....(((.(((((.(((((((((((..----.((((.....))))....)))))))).((((........))))......)))))))).)))))))))............ ( -25.30)
>consensus
UCAAAGCCGAUGUAACAUCGAUAAGUAUCGCCAAUA____ACAUCGAUGCAUCGACGUGCCGUGACAUCACUAAUAUGAACAGCUGAACAACAAUAAUCAUAUUUGGUUAAAAACAAUU
....((((((((...(((((((....................)))))))))))).......(((....)))...........))).........((((((....))))))......... ( -8.17 =  -8.89 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:11 2006