Locus 9701

Sequence ID 3R_DroMel_CAF1
Location 25,655,424 – 25,655,520
Length 96
Max. P 0.995074
window15497

overview

Window 7

Location 25,655,424 – 25,655,520
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 95.23
Mean single sequence MFE -26.81
Consensus MFE -25.36
Energy contribution -25.44
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.75
Structure conservation index 0.95
SVM decision value 2.54
SVM RNA-class probability 0.995074
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25655424 96 + 27905053
ACCAAACUGCAGGCUACUCCGCAUUUG-AUCGGAAUGCUUGCGUGGUGGCAAAGGUGGAAAUGUCCUCUUUUCCAAGCCAUAAAUUAGCAAAACAUU
........((((((...((((......-..))))..))))))(((((((.(((((.(((....))).)))))))..)))))................ ( -27.60)
>DroSec_CAF1 1939 96 + 1
ACCGAACUGCAGGCUACUCCGCAUUUG-AUCGGAAUGCUUGCGUGGUGGCAAAGGUGGAAAUGUCCUCUUUUCCAAGCCAUAAACUAGCAAAACAUU
........((((((...((((......-..))))..))))))(((((((.(((((.(((....))).)))))))..)))))................ ( -27.60)
>DroSim_CAF1 1981 96 + 1
ACCGAACUGCAGGCUACUCCGCAUUUG-AUCGGAAUGCUUGCGUGGUGGCAAAGGUGGAAAUGUCCUCUUUUCCAAGCCAUAAAUUAGCAAAACAUU
........((((((...((((......-..))))..))))))(((((((.(((((.(((....))).)))))))..)))))................ ( -27.60)
>DroEre_CAF1 1802 96 + 1
ACCAAACUGCAAGCCACUCCGCGUUUU-AUCGGAAUGCUAGCGUGGUGGCAAAGGUGGAAAUGUCCUCUUUUCCAAGCCAUAAAUUAGCAAAACAUU
.......(((..(((((..(((.....-............)))..)))))...((((((((........)))))..)))........)))....... ( -26.03)
>DroYak_CAF1 1868 97 + 1
ACCAAACUGCAGGCCAAUCCGCAUUUUGAUCGGUAUGCUUGCGUGGUGGCAAAGGUGGAAAUGUCCUCUUUUCCAAGCCAUAAAUUAGCAAAACAUU
........((((((....(((.((....)))))...))))))(((((((.(((((.(((....))).)))))))..)))))................ ( -25.20)
>consensus
ACCAAACUGCAGGCUACUCCGCAUUUG_AUCGGAAUGCUUGCGUGGUGGCAAAGGUGGAAAUGUCCUCUUUUCCAAGCCAUAAAUUAGCAAAACAUU
........((((((...((((.((....))))))..))))))(((((((.(((((.(((....))).)))))))..)))))................ (-25.36 = -25.44 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:10 2006