Locus 9700

Sequence ID 3R_DroMel_CAF1
Location 25,654,967 – 25,655,058
Length 91
Max. P 0.552348
window15496

overview

Window 6

Location 25,654,967 – 25,655,058
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 80.19
Mean single sequence MFE -20.41
Consensus MFE -14.76
Energy contribution -15.80
Covariance contribution 1.04
Combinations/Pair 1.17
Mean z-score -1.47
Structure conservation index 0.72
SVM decision value 0.04
SVM RNA-class probability 0.552348
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25654967 91 + 27905053
AAAGUCUUUUACUAAUUGCUAAGUAAAAGCCGUUCCAUGGCGCUGCCCUUAUAGGUGCAGUCGCUCGCUCUUUCUCUCUGGCAGCCUAGCA
......(((((((........)))))))(((((...)))))(((((((.....)).))))).(((.(((((........)).)))..))). ( -23.60)
>DroSec_CAF1 1495 81 + 1
AAAGUCUUUUACUAAUUGCUUGGUAAAAGCCGUUCCAUGGCGCUGCCCUUAUAGGUGCAGUCGCUCGCUCUUUCUCUCGGC----------
......(((((((((....)))))))))((((......((((((((((.....)).)))).))))............))))---------- ( -22.47)
>DroSim_CAF1 1537 81 + 1
AAAGUCUUUUACUAAUUGCUUGGUAAAAGCCGUUCCAUGGCGCUGCCCUUAUAGGUGCAGUCGCUCGCUCUUUCUCUCGGC----------
......(((((((((....)))))))))((((......((((((((((.....)).)))).))))............))))---------- ( -22.47)
>DroEre_CAF1 1365 69 + 1
AAAGU-----ACUAAUUGCAAAAUAAAAGCCGUUCCAAGGCGCUGCCCUUAUAGGAGUAGUCGC----CCUUUCUCUU-------------
.....-----............................((((((((((.....)).)))).)))----).........------------- ( -14.20)
>DroYak_CAF1 1453 74 + 1
AAAGUCUUAAACUAAUUGCCAGGUAAAAGCCGUUCCAUGGCGCUGCCCUUAUAGGUGCAGUUGC----CCUUGCUCUU-------------
.................((.(((.....(((((...)))))(((((((.....)).)))))...----))).))....------------- ( -19.30)
>consensus
AAAGUCUUUUACUAAUUGCUAGGUAAAAGCCGUUCCAUGGCGCUGCCCUUAUAGGUGCAGUCGCUCGCUCUUUCUCUC_G___________
...(.((((((((........)))))))).)........(((((((((.....)).)))).)))........................... (-14.76 = -15.80 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:09 2006