Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,157,608 – 3,157,723 |
Length | 115 |
Max. P | 0.824444 |
Location | 3,157,608 – 3,157,723 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.21 |
Mean single sequence MFE | -26.28 |
Consensus MFE | -22.33 |
Energy contribution | -23.33 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.85 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3157608 115 - 27905053 ----UCGAUA-UUAUAUGUUUUUUCCUGUGCAUCUCCUUUGAUCUUCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGGU ----..((((-.............((((.((......(((((((..((......))..)))))))......)))))).(((((((((((.......))))))))))).))))........ ( -28.50) >DroSec_CAF1 5463 116 - 1 ----UUAAUGGUUAAAUAUUUCUUCCUGUGCAUCUCCCUUGAUCUUCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGCU ----..((((((............((((.((.......((((((..((......))..)))))).......)))))).(((((((((((.......)))))))))))..))))))..... ( -26.94) >DroSim_CAF1 7607 115 - 1 ----UUAAUG-UUAAAUAUUUCUUCCUGUGCAUCUCCUUUGAUCUCCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGCU ----..((((-.(((.........((((.((......(((((((.((.......))..)))))))......)))))).(((((((((((.......)))))))))))))).))))..... ( -27.80) >DroYak_CAF1 5160 119 - 1 UCCUUUUAUG-UUUUAUGUUUCUUCCGGUGCAUCUGCUUGAAUCUCCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGCU ..........-....((((.((....)).))))..((..((((...........((((((.......)).)))).((((((((((((((.......)))))))))))..))))))).)). ( -21.90) >consensus ____UUAAUG_UUAAAUAUUUCUUCCUGUGCAUCUCCUUUGAUCUCCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGCU ........................((((.((......(((((((..((......))..)))))))......)))))).(((((((((((.......)))))))))))............. (-22.33 = -23.33 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:56 2006