Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 603,011 – 603,101 |
Length | 90 |
Max. P | 0.559127 |
Location | 603,011 – 603,101 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 79.20 |
Mean single sequence MFE | -37.37 |
Consensus MFE | -20.59 |
Energy contribution | -20.02 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.44 |
Mean z-score | -1.78 |
Structure conservation index | 0.55 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 603011 90 - 27905053 CCGGCUGGGCGAUCGCGACCCA------GAGCCAGAUCUGGAGCCCGAACGUGAUCGGGAACCGGACUUGGAUCUCGACCUAGAACGCGACCGAGA ..(((((((((....)).))).------.))))...(((((..(((((......)))))..)))))(((((.((.((........)).))))))). ( -35.90) >DroSec_CAF1 19093 90 - 1 CCGGCUGGGCGAUCGCGAUCCA------GAGCCAGAUCUGGAGCCCGAACGGGAUCGGGAACCGGACUUGGAGCGCGACCGAGAACGAGACCGAGA .(((((.(.((.(((((.((((------(..((.(.(((.((.(((....))).)).))).).))..))))).))))).))....).)).)))... ( -38.90) >DroSim_CAF1 18245 90 - 1 CCGGCUGGGCGAUCGCGAUCCA------GAGCCAGAUCUGGAGCCCGAACGGGAUCGGGAACCGGACUUGGAUCGCGACCGAGAACGAGACCGAGA .(((((.(.((.((((((((((------(..((.(.(((.((.(((....))).)).))).).))..))))))))))).))....).)).)))... ( -43.50) >DroEre_CAF1 21546 90 - 1 UCGGCUGGGCGACCGCGAUCCA------GAGCCAGAUCUGGAGCCCGAACGGGAGCGGGAGCCGGAUUUGGAUCCAGAUCGAGAACGCGACCGAGA ((((....(((..(.(((((..------((.((((((((((..((((........))))..)))))))))).))..))))).)..)))..)))).. ( -42.20) >DroYak_CAF1 24439 84 - 1 UCGGCUGGGCGAAUGCG------------AGCCAGAUCUGGAGCCCGAACGGGAUCGGGAACCGGACUUGGAUCUAGAUCGAGAACGCGACCGAGA ((((....(((....((------------(.((((.(((((..(((((......)))))..))))).)))).......)))....)))..)))).. ( -30.70) >DroAna_CAF1 22629 96 - 1 CCGCGUCGGUGAACGGGAGCCGGAUCGUGAGCGGGAUCCGGACUUUGAACGGGAGUGGGAACGAGACCUCGAUCUGGAAGGGGUUCGGGAACGUGA ((((..(.((...((((..(((((((.(....).)))))))..)))).)).)..))))...((((.((((.........))))))))......... ( -33.00) >consensus CCGGCUGGGCGAUCGCGAUCCA______GAGCCAGAUCUGGAGCCCGAACGGGAUCGGGAACCGGACUUGGAUCUCGACCGAGAACGCGACCGAGA .(((....((....))...............((((.(((((..((((........))))..))))).))))...................)))... (-20.59 = -20.02 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:59 2006