| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,653,638 – 25,653,746 |
| Length | 108 |
| Max. P | 0.748093 |
| Location | 25,653,638 – 25,653,746 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.75 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -17.25 |
| Energy contribution | -17.72 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.748093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25653638 108 + 27905053 AUCCACAAGCGAUCUUUAGGCCGCUCGAGUUGAAAGAAGCUCGAGCAAAAUCACAGCUGAUCUUAAAGUGUUCGUUUCUAUGGGUGA----UUGCAAUGUUGAAAAAAAAAA (((((.((((((.(((((((..(((((((((......)))))))))...((((....)))))))))))...))))))...)))))..----..................... ( -31.00) >DroPse_CAF1 3292 102 + 1 AUCCGCAGGCAAUUUUUAAGCCAUUCGAGUUAAAGGAAGCCCGAGCAAAAUCACAGCUGAUUUUAAAGUGUUCGUUUCUGCCGAAAG----AUGCAACA-CGACAAA----- ....((.(((.........)))..(((.(((......))).)))))(((((((....)))))))...(((((.((.(((......))----).))))))-)......----- ( -21.90) >DroSec_CAF1 226 103 + 1 AUCCACAAGCGAUCUUCAGGCCGCUCGAGUUGAAAGAAGCUCGAGCAAAAUCACAGCUGAUCUUAAAGUGUUCGUUUCUAUGGGUGA----UUGCAAUGGUGAAAAA----- ...(((..((((((((((....(((((((((......))))))))).........(((........)))...........)))).))----))))....))).....----- ( -28.60) >DroSim_CAF1 69 103 + 1 AUCCACAAGCGAUCUUCAGGCCGCUCGAGUUGAAAGAAGCUCGAGCAAAAUCACAGCUGAUCUUAAAGUGUUCGUUUCUAUGGGUGA----UUGCAAUGGUGAAAAA----- ...(((..((((((((((....(((((((((......))))))))).........(((........)))...........)))).))----))))....))).....----- ( -28.60) >DroEre_CAF1 69 103 + 1 AUCCGCAAGCAAUCUUCAAGCCGCUCGAGUUGAAUGAAGCCCGAGCAAAAUCACAGCUGAUUUUAAAGUGUUCGUUUCUAUACGCAAGGAGUUGC-------A--AAAGGGU ((((....((((.((((..((.(((((.(((......))).)))))(((((((....)))))))...((((........))))))..))))))))-------.--...)))) ( -28.60) >DroAna_CAF1 69 105 + 1 AUCCACAAGCGAUCUUCAAGCCGCUCGGGUUGAAGGAGGCCCGAGCAAAAUCACAGCUGAUUUUAAAGUGUUCAUUUCUAAUGGACA----UCACAAUAAUUAAUAA---GU ........((.........)).(((((((((......)))))))))(((((((....)))))))...((((((((.....)))))))----)...............---.. ( -27.20) >consensus AUCCACAAGCGAUCUUCAAGCCGCUCGAGUUGAAAGAAGCCCGAGCAAAAUCACAGCUGAUCUUAAAGUGUUCGUUUCUAUGGGUGA____UUGCAAUG_UGAAAAA_____ ........((((.......((((((((((((......))))))))).((((....(((........)))....)))).....)))......))))................. (-17.25 = -17.72 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:08 2006