| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,650,799 – 25,650,897 |
| Length | 98 |
| Max. P | 0.777464 |
| Location | 25,650,799 – 25,650,897 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.13 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -15.52 |
| Energy contribution | -15.19 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.55 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25650799 98 + 27905053 --UAACC-CC-GUGCGCUCUCUCUCUC----UCUCUC-------CUCGUCACUAGGUCUUAUCACGGCUGCCACCAUUUUCCUGCUAACUCAGCUGGCCGUGAUCGCGAUCUG --.....-..-(((((...........----......-------..)).)))((((((..(((((((((((.....................)).)))))))))...)))))) ( -19.81) >DroSec_CAF1 7341 95 + 1 --UAACC-ACUAUGCUCUCUCA----C----UCUCUC-------CUCGUCACUAGGUCUUAUCACGGCUGCCACCAUUUUCCUGCUGACCCAGCUGGCCGUGAUCGCGAUCUG --.....-..............----.----......-------........((((((..(((((((((..............((((...)))).)))))))))...)))))) ( -19.96) >DroSim_CAF1 6296 99 + 1 --UAACC-ACUCUGCUCUCUCCCACUC----UCUCUC-------CGCGUCACUAGGUCUUAUCACGGCUGCCACCAUUUUCCUGCUGACCCAGCUGGCCGUGAUCGCGAUCUG --.....-...................----......-------........((((((..(((((((((..............((((...)))).)))))))))...)))))) ( -19.96) >DroEre_CAF1 6240 101 + 1 GAUAACC-UC-GUACUCUUUUCCCUUUU--AUUG-CC-------UUCAUUAUUAGGUCUUAUUACGGCUGCCACCAUUUUCUUGCUAACCCAGUUGGCCGUGAUCGCGAUCUG .......-((-((...............--...(-((-------(........))))...(((((((((..(....................)..))))))))).)))).... ( -16.75) >DroYak_CAF1 6621 105 + 1 AAUAACCCAC-GAACUCUUUUCCCUUUUUUAUUUCGC-------UGCGCUAUUAGGUCUUAUUACGGCUGCCACCAUUUUCCUGCUAACCCAGUUGGCCGUGAUCGCGAUCUG ((((.(.(((-(((..................)))).-------)).).))))(((((..(((((((((..(....................)..)))))))))...))))). ( -16.62) >DroAna_CAF1 2684 97 + 1 --UAUUC-UC-A-----------CAUUUUUAUUUCUCCUUUUUAUGCGUC-UCAGGUCUAAUUACAGCCGCCACCAUUUUCCUGCUAACACAGUUGGCAGUUAUUGCUAUUUG --.....-..-.-----------......................(((..-...((.((......))))............((((((((...))))))))....)))...... ( -12.50) >consensus __UAACC_AC_GUGCUCUCUCCCCCUC____UCUCUC_______CGCGUCACUAGGUCUUAUCACGGCUGCCACCAUUUUCCUGCUAACCCAGCUGGCCGUGAUCGCGAUCUG ....................................................((((((..((((((((((.............(((.....)))))))))))))...)))))) (-15.52 = -15.19 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:05 2006