Locus 9695

Sequence ID 3R_DroMel_CAF1
Location 25,649,473 – 25,649,571
Length 98
Max. P 0.617644
window15490

overview

Window 0

Location 25,649,473 – 25,649,571
Length 98
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 74.98
Mean single sequence MFE -31.79
Consensus MFE -18.12
Energy contribution -18.77
Covariance contribution 0.64
Combinations/Pair 1.35
Mean z-score -1.50
Structure conservation index 0.57
SVM decision value 0.17
SVM RNA-class probability 0.617644
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25649473 98 - 27905053
ACAUCCGCCAAGGUGGCACGACUGUGAUGGGAUAAUCUACACACCAUGUCACCCGUGUCGUUGUAGUCGUACGAAUGGCACCUGAG---UUGGAUGGAAA-U---
.(((((((..(((((.((((((((..((((.((.....(((.....))).....)).))))..)))))))......).)))))..)---.))))))....-.--- ( -32.60)
>DroEre_CAF1 4932 100 - 1
ACAUCCGCCAAGGUGGCACGACUGUGAUGGGAUAAUCUGCACACCAUGUCACCCGUGUCAUUAUAGUCGUACGAGUGGCACCUGUG---AUGGAUGCAGA-AUG-
.((((((.(((((((.((((((((((((((.((.....(((.....))).....)).)))))))))))......))).))))).))---.))))))....-...- ( -34.10)
>DroWil_CAF1 33767 91 - 1
ACAUCGGUCAAUGUGGCACGACUGUGAUGUGAGAGACGACAGACCAUAUCGCCCGUAUCAUUGUAAUCGUACGAGUGGCACCUGUA----------GAAU-A---
...((...((..(((.(((....((((((((.............)))))))).(((((.((....)).))))).))).))).))..----------))..-.--- ( -19.82)
>DroYak_CAF1 5298 101 - 1
ACAUCCGCCAAGGUGGCACGACUGUGAUGCGAUAAACGGCAGACCAUGUCACCCGUGUCAUUGUAGUCGUACGAGUGGCACCUGUG---AUGGAUGUAAA-UUGU
(((((((.(((((((.((((((((..(((......((((..(((...)))..))))..)))..)))))......))).))))).))---.)))))))...-.... ( -37.10)
>DroMoj_CAF1 10274 102 - 1
ACGUCCGUCAGCGUAGCGCGGCUGUGGUGGGAAAGGCGACAGACCAUGUCGCCCGUGUCAUUGUAGUCGUACGAGUGGCAUCUACAAAGAUGAGUAGAAAUA---
......((((.(((...(((((((..((((.(..(((((((.....)))))))..).))))..))))))))))..)))).(((((........)))))....--- ( -41.90)
>DroPer_CAF1 7948 95 - 1
ACAUCAGCGAGAGUGGCACGACUAUGGUGAGAUAAGCGGCAUACCAUGUCCCCAGUAUCGUUGUAGUCAUACGAGUGACAUCUA-G---UCGUA--GAAA-C---
....((((((.(.(((...(((.((((((.(........).))))))))).))).).))))))..(((((....))))).((((-.---...))--))..-.--- ( -25.20)
>consensus
ACAUCCGCCAAGGUGGCACGACUGUGAUGGGAUAAACGACAGACCAUGUCACCCGUGUCAUUGUAGUCGUACGAGUGGCACCUGUG___AUGGAUGGAAA_A___
......((((...((..(((((((..((((.((....((((.....))))....)).))))..))))))).))..)))).......................... (-18.12 = -18.77 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:04 2006