Locus 9694

Sequence ID 3R_DroMel_CAF1
Location 25,648,317 – 25,648,411
Length 94
Max. P 0.637640
window15489

overview

Window 9

Location 25,648,317 – 25,648,411
Length 94
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -38.08
Consensus MFE -28.93
Energy contribution -29.43
Covariance contribution 0.50
Combinations/Pair 1.20
Mean z-score -1.34
Structure conservation index 0.76
SVM decision value 0.22
SVM RNA-class probability 0.637640
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25648317 94 - 27905053
GCUAUCCUCCUCGGAACCCAGAGAGCUGGACAAAUCCGAGGCGGCCGGCAAGUCGAAGCCCGAGUUGCGGGUCUCCACGUUUUCUACGGGCCUC-----
(((..((.(((((((..((((....)))).....))))))).))..))).....((.(((((((..(((((...)).)))...)).))))).))----- ( -38.40)
>DroSec_CAF1 4868 94 - 1
GCUAUCCUCCUCGGAGCCCAGCGAGCUGGACGAAUCCGAGGCGGCCGGCAAGUCGAAGCCCGAGUUGCGGGUCUCCACGUUUUCCGCGGGCCUC-----
........(((((((..((((....)))).....))))))).((((.((..((.((..((((.....))))..)).))(.....))).))))..----- ( -39.80)
>DroSim_CAF1 3823 94 - 1
GCUGUCCUCCUCGGAGCCCAGCGAGCUGGACGAAUCCGAGGCGGCCGGCAAGUCGAAGCCCGAGUUGCGGGUCUCCACGUUUUCCGCGGGCCUC-----
((((..(((....)))..))))..(((.(..(((..((.((.((((.((((.(((.....))).)))).)))).)).))..)))..).)))...----- ( -42.90)
>DroEre_CAF1 3776 94 - 1
GCCAUCCUCCUCGGAACCCAGGGAGCUGGACAAGUCCGAGACAGCUGGCAAAUCGAAGGCCGAGUUGCGGGUCUCCAGAUUUUCCACCGGCCUC-----
((((.(...((((((..((((....)))).....))))))...).)))).......((((((.((.(..((((....))))..).)))))))).----- ( -36.80)
>DroYak_CAF1 4066 94 - 1
GCUAUCCUCCUCGGAGCCCAGCGAGCUGGAUAAAUCCGAGGCAGCCGGCAAAUCGAAGGCCGAGUUGCGGGUCUCCACAUUUUCAACGGGCCUC-----
(((...(((((((((..((((....)))).....))))))).))..))).......(((((..((((..(((......)))..)))).))))).----- ( -34.70)
>DroAna_CAF1 253 99 - 1
CCCAUCUUCAUCCGAACCCGACGAACCGGAUAAAUCCGAAGAGGCUGGCAGAUCAUAGGCGGAGUUCCGAGUCUCCGCCUGAUUAGCUGGCACCACUGU
....(((((...((....)).......(((....)))))))).((..((.(((((..(((((((........)))))))))))).))..))........ ( -35.90)
>consensus
GCUAUCCUCCUCGGAACCCAGCGAGCUGGACAAAUCCGAGGCGGCCGGCAAAUCGAAGCCCGAGUUGCGGGUCUCCACGUUUUCCACGGGCCUC_____
(((.....(((((((..((((....)))).....))))))).((((.((((.(((.....))).)))).))))...............)))........ (-28.93 = -29.43 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:03 2006