Locus 9692

Sequence ID 3R_DroMel_CAF1
Location 25,643,811 – 25,643,914
Length 103
Max. P 0.587442
window15486

overview

Window 6

Location 25,643,811 – 25,643,914
Length 103
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.78
Mean single sequence MFE -20.42
Consensus MFE -10.30
Energy contribution -10.50
Covariance contribution 0.20
Combinations/Pair 1.30
Mean z-score -1.77
Structure conservation index 0.50
SVM decision value 0.11
SVM RNA-class probability 0.587442
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25643811 103 + 27905053
UCUUUCAAUAA---CUA----GGGCUUUCUUCGGUCCGAUUCUCCUCGCUUUUCACAAAUG-----UAUAUCA---U-UUGAAUAGCAUUAAUGGCCAA-AUCUGGCCUCCACUCAUCUA
...........---...----(((((......)))))(((.......(((.((((..((((-----.....))---)-))))).)))......(((((.-...))))).......))).. ( -22.10)
>DroSim_CAF1 10756 103 + 1
UCUUUCAAUAA---CUA----GGGCUUUCUUCGGUCCGAUUCUUCUCGCUGUUUACAAAUG-----UAUAUCU---C-UUGAAUAGCAUUAAUGGCCAA-AUCUGGCCUCCACUCAUCUA
...........---...----(((((......)))))(((.......((((((((......-----.......---.-.))))))))......(((((.-...))))).......))).. ( -20.86)
>DroEre_CAF1 10728 99 + 1
UCUUUCAAUAA---CUA----GGGCUUUCUUCGGACCGGUUCGCCUCGGUUUUCACA---------UAUAUCA---C-UCGAAUAGCAUUAAUGGCCAA-AUUUGGCCUCCACUCAUCUA
...........---...----(((((...((((((((((......))))))......---------.......---.-.)))).)))......(((((.-...))))).))......... ( -19.26)
>DroYak_CAF1 10759 99 + 1
UCUUUCAAUAA---CUA----GGGCUUUCUUCGGACCGAUUCGCCUUGGUUUUCACA---------UAUAUCA---C-UCGAAUAGCAUUAAUGGCCAA-AUUUGGCCGCCACUCAUCUA
.........((---(((----((((..((....)).......)))))))))......---------.......---.-...............(((((.-...)))))............ ( -19.90)
>DroAna_CAF1 13924 117 + 1
---UUCAAUAAACGCUAAAACGGACUUUCUUUGGUCUACUUAUUAUUCAUUUUGACGCUUGGCGACUAUUUCAUCUCUUUUAGUAGCAUAAAUGGCCAAAAUCUCGUCCGUAUACCUUUA
---................((((((....(((((((..........((.....))......((.((((............)))).))......))))))).....))))))......... ( -20.00)
>consensus
UCUUUCAAUAA___CUA____GGGCUUUCUUCGGUCCGAUUCUCCUCGCUUUUCACA__UG_____UAUAUCA___C_UUGAAUAGCAUUAAUGGCCAA_AUCUGGCCUCCACUCAUCUA
.....................(((((......)))))........................................................(((((.....)))))............ (-10.30 = -10.50 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:00 2006