Locus 9691

Sequence ID 3R_DroMel_CAF1
Location 25,642,632 – 25,642,751
Length 119
Max. P 0.657157
window15485

overview

Window 5

Location 25,642,632 – 25,642,751
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.18
Mean single sequence MFE -44.07
Consensus MFE -30.98
Energy contribution -30.73
Covariance contribution -0.24
Combinations/Pair 1.32
Mean z-score -1.36
Structure conservation index 0.70
SVM decision value 0.26
SVM RNA-class probability 0.657157
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25642632 119 - 27905053
GUGGGCAUCGUGUCGUGGGGAGUGGGGUGCGCCCUGGCGGACAAGCCGGGAGUCUACUCCCGCCUCGAUGCACUGCAUCCCUGGCUAGACCAGGUCUUGAAUAAGUCAAA-GUAAUGCAA
....((((.(((.(((.(((.((((((((.((((((((......)))))).)).))).)))))))).))))))(((...(((((.....)))))..((((.....)))).-))))))).. ( -48.60)
>DroSec_CAF1 9578 119 - 1
GUGGGGAUCGUGUCGUGGGGAGUGGGGUGCGCCCUGGCGGACAAGCCGGGCGUUUACUCCCGCCUCGAUGCCUUGUAUCCCUGGCUAGACCAGGUCUUGAAUAAGUCAAA-GUAAUGCAA
..(((.((((....(((((.(((((...((((((.(((......)))))))))))))))))))..)))).)))(((((.(((((.....)))))..((((.....)))).-...))))). ( -47.70)
>DroSim_CAF1 9574 119 - 1
GUGGGCAUCGUGUCGUGGGGUGUGGGGUGCGCCCUGGCGGACAAGCCGGGCGUUUACUCCCGCCUCGAUGCACUGCAUCCCUGGCUAGACCAGGUCUUGAAUAAGUCAAA-GUAAUGCAA
....((((.((((..(((((((.(((((((((((.(((......)))))))))..))))))))))))..))))(((...(((((.....)))))..((((.....)))).-))))))).. ( -52.60)
>DroEre_CAF1 9541 117 - 1
GUGGGCAUCGUGUCCUGGGGAGUGGGGUGCGCCCUGGCGGACAAGCCGGGAGUGUAUGCCCGACUCGAUGAACUGCAUCCAUGGCUAAACAAGGUCUUGAAUAAAUCAUAAAAAAU---A
..((((.....))))....((((.((((((((((((((......)))))).))))..)))).))))((((.....))))((.((((......)))).)).................---. ( -41.60)
>DroYak_CAF1 9565 117 - 1
GUGGGCAUCGUGUCCUGGGGAGUGGGCUGCGCCCUGGCGGACAAGCCGGGGGUCUAUACCCGCCUCGAUGCACUGCAUCCCUGGCUAAACAAGGUCUUGAAUAAAGCAUAAAGAAU---A
((.....(((.(.(((.(((.((((((....(((((((......))))))))))))).)))(((..(((((...)))))...)))......))).).))).....)).........---. ( -41.70)
>DroAna_CAF1 12580 119 - 1
AUUGGCAUUGUCUCCUGGGGCGUGGGAUGCGCCCAGCCCAACAAGCCUGGUGUUUAUUCCCGACUUGAGACUUUGUCUUCAUGGGUUAAUACAACUUUGCAUACAUAAAA-CAUGUUAAA
.(((((((.((.(..((((((.((((.....)))))))).....((..(((((.....((((....(((((...)))))..)))).....)).)))..))...))..).)-)))))))). ( -32.20)
>consensus
GUGGGCAUCGUGUCCUGGGGAGUGGGGUGCGCCCUGGCGGACAAGCCGGGAGUUUACUCCCGCCUCGAUGCACUGCAUCCCUGGCUAAACAAGGUCUUGAAUAAAUCAAA_GUAAUGCAA
....(((..(((((..((((.(.((((((.((((((((......)))))).)).))))))).)))))))))..)))......((((......))))........................ (-30.98 = -30.73 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:59 2006