Locus 9689

Sequence ID 3R_DroMel_CAF1
Location 25,634,834 – 25,634,930
Length 96
Max. P 0.640845
window15481

overview

Window 1

Location 25,634,834 – 25,634,930
Length 96
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 85.44
Mean single sequence MFE -17.47
Consensus MFE -14.07
Energy contribution -14.48
Covariance contribution 0.42
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.81
SVM decision value 0.22
SVM RNA-class probability 0.640845
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25634834 96 - 27905053
GUGUGAGAGUUGUGCAAACUCACCACGCAAGCGACGCUUCAAAAGAUGCAACAGUUCUCUUAAAACUGCACACCAAUA--AAAAAAAUGAAAAAUUCA
(((((.(((((.....)))))..(.(....).)..((.((....)).))..(((((.......)))))))))).....--.................. ( -17.10)
>DroPse_CAF1 1914 90 - 1
GUGUGAGAG--------ACUCACCGCACAAGCGACGCCUCAAUAGAUGCAACAGUUCUCUCAAAACUGCACACCAAUCGAAAACAAAUAUAAAAUACA
(((((((((--------(((...(((....)))..((.((....)).))...)).))))))......))))........................... ( -16.50)
>DroSec_CAF1 1784 94 - 1
GUGUGAGAGUUGUGCAAACUCACCACGCAAGCGACGCUUCAAAAGAUGCAACAGUUCUCUUAAAACUGCACACCAAUA--AA--AAAUAUAAAAUACA
(((((.(((((.....)))))..(.(....).)..((.((....)).))..(((((.......)))))))))).....--..--.............. ( -17.10)
>DroEre_CAF1 1794 92 - 1
GUGUGAGAGUUGUGCAAACUCA---AGCAAGCGACGCUUCAAAAGAUGCAACAGUUCUCUUAAAACUGCACACCAAUA--AA-CAAAUAUAAAAUACA
(((((.(((((.....))))).---..........((.((....)).))..(((((.......)))))))))).....--..-............... ( -16.10)
>DroAna_CAF1 1850 96 - 1
GUGUGAGAGUUGGGCGAACUCACCACGCAAGCGACGCUUCAAUAGAUGCAACAGUUCUCUCAAAACUGCACACCAAUA--AAAAAUACAUAAUAUUCA
(((((((..(((((.(((((...(.(....).)..((.((....)).))...))))).)))))..)).))))).....--.................. ( -22.70)
>DroPer_CAF1 1907 90 - 1
GUGUGAGAG--------ACUCACCGCACAAGGGACGCCUCAAUAGAUGCAACAGUUCUCUCAAAACUGCACACCAAUCGAAAACAAAUAUAAAAUACA
(((((((((--------(((..((......))...((.((....)).))...)).))))))......))))........................... ( -15.30)
>consensus
GUGUGAGAGUUGUGCAAACUCACCACGCAAGCGACGCUUCAAAAGAUGCAACAGUUCUCUCAAAACUGCACACCAAUA__AAACAAAUAUAAAAUACA
(((((.(((((.....)))))..............((.((....)).))..(((((.......))))))))))......................... (-14.07 = -14.48 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:56 2006