Locus 9688

Sequence ID 3R_DroMel_CAF1
Location 25,633,873 – 25,633,993
Length 120
Max. P 0.658215
window15480

overview

Window 0

Location 25,633,873 – 25,633,993
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.39
Mean single sequence MFE -42.55
Consensus MFE -26.75
Energy contribution -28.03
Covariance contribution 1.28
Combinations/Pair 1.19
Mean z-score -1.86
Structure conservation index 0.63
SVM decision value 0.26
SVM RNA-class probability 0.658215
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25633873 120 - 27905053
GCCGAUAAUGGCCCUAUUCUGUCCACUGUUGGUCUUCCACCAGACGACGGACAAGGGAUAGGGGCAGGUCUUGGACGCCAUGAAAGAGGCUGCCAUCACCUGGCUAUUGCCGGUGGUAUC
((((.((((((((...((((((((..((((.(((.((.....)).))).))))..))))))))..((((..(((..(((.(....).)))..)))..)))))))))))).))))...... ( -50.20)
>DroPse_CAF1 878 120 - 1
GCCAAUAAUGGCCCUGUUUAGGCCCUGGUUGGUCUUCCACCACACCACUGAGAGAGGGUACGGGCAGGUCUUGGAUGCCAUGAAGGAUGCUGCCAUCACCUGGCUAUUUCCAGUGGCAUC
((((....))))(((((((..((((((((((((.....)))).)))..(....))))))..))))))).....((((((((...(((....((((.....))))....))).)))))))) ( -47.30)
>DroGri_CAF1 977 120 - 1
GCCGAUGAUGGCACGAUUUAAGCCAUUAUACGUCUUCCACCAAACCACAGACAGCGGAUACGGACACGUCUUGGAGGCCAUAAAUGAGGCAGCCAUCACUUGACUGUUGCCCGUCGCAUC
((((((((((((.........)))))))).)).................(((.(.((..((((.((.((..(((..(((........)))..)))..)).)).))))..))))))))... ( -33.20)
>DroWil_CAF1 7490 120 - 1
GCCAAUAAUGGCCCUAUUAAGGCCAUAAUUGGUUUUCCACCACACCACCGAGAGUGGAUACGGGCAGGUCUUGGACGCCAUAAAAGAGGUAGCCAUCACCUGACUGUUGCCGGUGGCAUC
((((((.((((((.......)))))).))))))...(((((...((((.....))))..((((.(((((..(((..(((........)))..)))..))))).))))....))))).... ( -49.00)
>DroMoj_CAF1 946 120 - 1
GCCAAUGAUGGCUCGAUUCAAGCCAUAAUACGUUUUCCACCACACCACUGACAGCGGAUACGGGCAUGUCUUGGAUGCCAUGAAUGAGGUGGCCAUAACCUGGCUAUUGCCCGUUGCAUC
(((....((((((.......))))))....(((..(((.(..((....))...).))).))))))........(((((.(((...(..(((((((.....)))))))..).))).))))) ( -32.90)
>DroAna_CAF1 808 120 - 1
CCCAAUAAUGGCCCUAUUUAGACCGUGAUUGGUUUUCCACCACACCACGGACAAGGGAUAGGGACAGGUCUUGGACGCCAUGAAAGAGGUAGCCAUAACCUGGCUAUUGCCGGUGGCAUC
.(((....)))((((((((...(((((..((((.....))))...))))).....)))))))).(((((..(((..(((.(....).)))..)))..)))))(((((.....)))))... ( -42.70)
>consensus
GCCAAUAAUGGCCCUAUUUAGGCCAUAAUUGGUCUUCCACCACACCACGGACAGCGGAUACGGGCAGGUCUUGGACGCCAUGAAAGAGGCAGCCAUCACCUGGCUAUUGCCGGUGGCAUC
((((((.((((((.......)))))).))))))......................((....((.(((((..(((..(((........)))..)))..))))).))....))......... (-26.75 = -28.03 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:55 2006