Locus 9686

Sequence ID 3R_DroMel_CAF1
Location 25,624,905 – 25,624,997
Length 92
Max. P 0.939529
window15477

overview

Window 7

Location 25,624,905 – 25,624,997
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 75.83
Mean single sequence MFE -28.18
Consensus MFE -11.55
Energy contribution -11.72
Covariance contribution 0.17
Combinations/Pair 1.36
Mean z-score -2.53
Structure conservation index 0.41
SVM decision value 1.28
SVM RNA-class probability 0.939529
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25624905 92 - 27905053
UUACCAAUGUUCUGGACACCAGAGCAAGUGGAGAGCAUGCUGGAAGUGCUAAAGACCUCCACGGAUCGAACAGUCAUUUACAAAUGCCUGGU
...((..((((((((...)))))))).(((((((((((.......)))))......))))))))......(((.((((....)))).))).. ( -29.70)
>DroPse_CAF1 59828 90 - 1
U--UCAAUGUUUUGGUCAUUAGAGCAGGUUGAGGGCAUGCUAAAUGUCCUCAAAACCUCGACAGAUCGAACUGUUGUGUACAAAUGCCUGGU
.--..........((.((((.(.(((((((((((((((.....)))))))))..))).((((((......))))))))).).)))))).... ( -28.00)
>DroSim_CAF1 52761 92 - 1
UUACCAAUGUUCUGGACACCAGAGCAAGUGGAGAGCAUGCUGGAAGUGCUAAAGACCUCCACGGAUCGAACAGUCAUUUACAAAUGCCUAGU
...((..((((((((...)))))))).(((((((((((.......)))))......)))))))).......((.((((....)))).))... ( -26.30)
>DroWil_CAF1 61568 91 - 1
-AACAAAUGGUUUGGUCCUCCGAACAAGUUGAGGACAUUUUAAAUGUCCUCAAGACGGCGACGGACAAGACCGUAAUAUACAAAUGUCUAGU
-.....(((((((.((((..((......((((((((((.....)))))))))).....))..)))).))))))).................. ( -29.40)
>DroAna_CAF1 54584 92 - 1
AAAAUAAUGUUUUGGUCAACGGAACAGGUCGAGGGCAUGCUCAACGUGCUCAAGACCUCCACUGACCGUACGGUAAUCUACAAAUGUUUGGU
.......(((..((((((..(((...((((..(((((((.....)))))))..)))))))..)))))).))).................... ( -27.70)
>DroPer_CAF1 61691 90 - 1
U--UCAAUGUUUUGGUCAUUAGAGCAGGUUGAGGGCAUGCUAAAUGUCCUCAAAACCUCGACAGAUCGAACUGUUGUGUACAAAUGCCUGGU
.--..........((.((((.(.(((((((((((((((.....)))))))))..))).((((((......))))))))).).)))))).... ( -28.00)
>consensus
U_ACCAAUGUUUUGGUCAUCAGAGCAAGUUGAGGGCAUGCUAAAUGUCCUCAAGACCUCCACGGAUCGAACAGUAAUGUACAAAUGCCUGGU
.......(((((((.....))))))).(((((((.....................))))))).............................. (-11.55 = -11.72 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:52 2006