Locus 9685

Sequence ID 3R_DroMel_CAF1
Location 25,622,252 – 25,622,372
Length 120
Max. P 0.650272
window15476

overview

Window 6

Location 25,622,252 – 25,622,372
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.56
Mean single sequence MFE -36.66
Consensus MFE -20.42
Energy contribution -21.09
Covariance contribution 0.67
Combinations/Pair 1.27
Mean z-score -1.91
Structure conservation index 0.56
SVM decision value 0.24
SVM RNA-class probability 0.650272
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25622252 120 - 27905053
UGAUAUCCCAACAGAGAGCCGCCAUUUCGGUGGCCUACAUAGUUAAAAGCCAUCGAUUGCUCUAUCAGUUCCUGUACGACGGCAAUGCGCUGAAUAUGCUAUUCGACAUGAUGCUGCGCA
..............((.((((((.....))))))))............(((.(((((.(((.....)))....)).))).)))..(((((.(..((((........))))...).))))) ( -28.60)
>DroVir_CAF1 69857 120 - 1
UAAAUGCACAACAACGUGCCGCUAUUUCCGUGGCGUACAUCAUCAAAAGCCAUCGGCUGCUCUAUCAGUUCUUAUAUGAUGGCAAUGCAUUGACUCUGCUCUUCGACUUGCUGUUGCGCA
....(((.(((((....(((((.......)))))(((..((.......(((((((((((......)))).......)))))))...(((.......))).....))..)))))))).))) ( -32.11)
>DroGri_CAF1 70560 120 - 1
UGAGUGCACAACAACGGGCUGCCAUAUCCGUGGCGUAUAUCAUCAAAAGCCAUCGGCUGCUCUAUCAGUUUCUGUAUGAUGGCAAUGCGCUCACGUUGUUGUUCGACCUGUUGCUGCGCA
...(((((...((((((((.((.(((..((((((((((.((((((..((((...)))).......(((...)))..))))))..)))))).)))).))).))..).))))))).))))). ( -39.30)
>DroWil_CAF1 58928 120 - 1
UCAAUGCCCAGCAGCGUGCUGCCAUUUCGGUGGCAUUUAUAAUCAAAAGUCAUCGAUUGCUCUAUCAGUUUCUUUAUGAUGGAAAUGCAUUGACUUUGCUCUUUGACUUGCUGUUGCGUA
....(((.(((((((((((..((.....))..))))..........((((((..((....(((((((.........)))))))...(((.......)))))..))))))))))))).))) ( -38.40)
>DroMoj_CAF1 61854 120 - 1
UGAAUGCACAGCAGCGGGCGGCCAUAUCCGUGGCGUACAUCAUUAAAAGCCAUCGGCUGCUCUAUCAGUUCUUGUAUGACGGCAAUGCGCUGACUCUGCUCUUCGACUUGCUGCUGCGCA
....(((.(((((((((((((((......(((((..............))))).))))))))..(((((.(((((......)))).).)))))................))))))).))) ( -44.14)
>DroAna_CAF1 51899 120 - 1
UCAAUGCCCAACAGCGGGCAGCCAUCUCGGUGGCCCACAUCAUCAGAAGCCAUCGGCUUCUAUACCAAUUUCUUUACGAUGGCAACGCCCUGACCCUGCUCUUUGACCUGCUCCUGCGCA
....(((.((..((((((((((((((..((((.....))))...(((((((...)))))))................))))))...((.........))....)).))))))..)).))) ( -37.40)
>consensus
UGAAUGCACAACAGCGGGCCGCCAUUUCCGUGGCGUACAUCAUCAAAAGCCAUCGGCUGCUCUAUCAGUUCCUGUAUGAUGGCAAUGCGCUGACUCUGCUCUUCGACUUGCUGCUGCGCA
....(((.((.(((((....(((((....)))))..............(((((((((((......)))).......))))))).........................))))).)).))) (-20.42 = -21.09 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:51 2006