Locus 9683

Sequence ID 3R_DroMel_CAF1
Location 25,615,372 – 25,615,467
Length 95
Max. P 0.800401
window15473

overview

Window 3

Location 25,615,372 – 25,615,467
Length 95
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 79.05
Mean single sequence MFE -20.28
Consensus MFE -16.36
Energy contribution -16.30
Covariance contribution -0.06
Combinations/Pair 1.22
Mean z-score -1.64
Structure conservation index 0.81
SVM decision value 0.61
SVM RNA-class probability 0.800401
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25615372 95 + 27905053
-----UACGAAAUCUGCUCACGGCUCGCAGCUAGCAAGAAGUCAAAUCAAACGAACCCUUUUUCUUUAU--UAGGAAAGAGCCAACGCAGAAAGCAAACGAA
-----.......(((((....(((((((.....)).........................((((((...--.)))))))))))...)))))........... ( -20.30)
>DroSec_CAF1 42028 91 + 1
-----UACGAAAUCUGCUCACGGCUCGCAGCUAGCAAGAAGUCAAAUCAAACGAACCCUUUCUU----U--UAGGAAAGAGCCAACGCAGAAAGCAAACGAA
-----.......(((((....(((((....((((.((((((.....((....))....))))))----)--)))....)))))...)))))........... ( -20.30)
>DroSim_CAF1 42951 91 + 1
-----UACGAAAUCUGCUCACGGCUCGCAGCUAGCAAGAAGUCAAAUCAAACGAACCCUUUCUU----U--UAGGAAAGAGCCAACGCAGAAGGCAAACGAA
-----.......(((((....(((((....((((.((((((.....((....))....))))))----)--)))....)))))...)))))........... ( -20.30)
>DroYak_CAF1 45422 85 + 1
GAACCAACGAAAUCUGCUCACGGCUCGCAGCCA-----------------GCGAACCUUUUUUUUUUAUUUGAAAGAAGAGCCAACGCAGAAGGCAAACGAA
............(((((....(((((((.....-----------------))))..((((((((.......)))))))).)))...)))))........... ( -20.20)
>consensus
_____UACGAAAUCUGCUCACGGCUCGCAGCUAGCAAGAAGUCAAAUCAAACGAACCCUUUCUU____U__UAGGAAAGAGCCAACGCAGAAAGCAAACGAA
............(((((....(((((((.....)).......................((((((........)))))))))))...)))))........... (-16.36 = -16.30 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:49 2006