Locus 9681

Sequence ID 3R_DroMel_CAF1
Location 25,609,640 – 25,609,735
Length 95
Max. P 0.721731
window15471

overview

Window 1

Location 25,609,640 – 25,609,735
Length 95
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 94.41
Mean single sequence MFE -22.47
Consensus MFE -21.74
Energy contribution -21.74
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.97
SVM decision value 0.40
SVM RNA-class probability 0.721731
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25609640 95 - 27905053
GGAUCACUCGACUGUGAAGUGUGCAGUGGGCAA-AAAUGGCUAAAAAUGGGUAGAUAUGGCCAAAAGACAGCAGACAAAACUGCAAGAAGCCGACU
...((((......)))).......(((.(((..-...((((((..............)))))).......((((......)))).....))).))) ( -24.14)
>DroSec_CAF1 36454 94 - 1
GGAUCACUCGACUGUGAAGU--GCAGUGGGCAAAAAAUGGCUACAAAUGGGUAAAUAUGGCCAAAAGACAGCAGACGAAAAUGCAAGAAGCCGACU
...((((......))))...--..(((.(((......((((((..............)))))).......(((........))).....))).))) ( -21.64)
>DroSim_CAF1 37416 94 - 1
GGAUCACUCGACUGUGAAGU--GCAGUGGGCAAAAAAUGGCUACAAAUGGGUAAAUAUGGCCAAAAGACAGCAGACGAAAAUGCGAGAAGCCGACU
...((((......))))...--..(((.(((......((((((..............)))))).......(((........))).....))).))) ( -21.64)
>consensus
GGAUCACUCGACUGUGAAGU__GCAGUGGGCAAAAAAUGGCUACAAAUGGGUAAAUAUGGCCAAAAGACAGCAGACGAAAAUGCAAGAAGCCGACU
...((((......)))).......(((.(((......((((((..............)))))).......(((........))).....))).))) (-21.74 = -21.74 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:47 2006