Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,157,031 – 3,157,150 |
Length | 119 |
Max. P | 0.569462 |
Location | 3,157,031 – 3,157,150 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -29.32 |
Consensus MFE | -22.06 |
Energy contribution | -22.12 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.91 |
Structure conservation index | 0.75 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3157031 119 + 27905053 CCAUGAUCCAAUGUCGCAAUAUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUACCUGGCUAUUCAGUCUAUCCGCUAGACUGACCACUUUCAAUUAUCUGACACGUUGGAA-AAAAGU ......((((((((..((...((((((((..((((.....)))))))))))).....(((....((((((((.....)))))))))))............))..)))))))).-...... ( -33.00) >DroSec_CAF1 4889 113 + 1 CCAUGAUCCAGUGUCGCAAUAUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUACCUGGCU-----GUCUAUCCGCUAGACUGACCACUUUCAAUUAUCUGACACGUUG-AA-AAAAGU ..........(((((......((((((((..((((.....)))))))))))).....((((.-----(((((.....))))).).))).............)))))....-..-...... ( -27.10) >DroSim_CAF1 7032 114 + 1 CCAUGAUCCAGUGUCGCAAUAUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUACCUGGCU-----GUCUAUCCGCUAGACUGACCACUUUCAAUUAUCUGACGCGUUGGAA-AAAAGU ......(((((((((......((((((((..((((.....)))))))))))).....((((.-----(((((.....))))).).))).............)))))..)))).-...... ( -29.90) >DroYak_CAF1 4585 115 + 1 CCAUGAUCCAAUGACGCUAUUUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUAUCUGCAU-----GUCUAUUCGCUAGACUGACCACUUUCAAUUAUCUGACACUUUGGAAAAAAAGU ......(((.....((((.((......)).))))(((((((((.....(((((......((.-----(((((.....)))))))......))))).....))))))))))))........ ( -27.30) >consensus CCAUGAUCCAAUGUCGCAAUAUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUACCUGGCU_____GUCUAUCCGCUAGACUGACCACUUUCAAUUAUCUGACACGUUGGAA_AAAAGU ......(((((((((......((((((((..((((.....))))))))))))...............(((((.....)))))...................))))..)))))........ (-22.06 = -22.12 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:53 2006