Locus 9676

Sequence ID 3R_DroMel_CAF1
Location 25,603,460 – 25,603,563
Length 103
Max. P 0.938489
window15462

overview

Window 2

Location 25,603,460 – 25,603,563
Length 103
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 72.35
Mean single sequence MFE -24.53
Consensus MFE -13.53
Energy contribution -14.68
Covariance contribution 1.15
Combinations/Pair 1.08
Mean z-score -1.89
Structure conservation index 0.55
SVM decision value 1.29
SVM RNA-class probability 0.938489
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25603460 103 - 27905053
CGAAUUGCGGCGGGCAAUCCGGCCAAUUC------CAAUUCCGAAUCCACACCCAUUUCCCAAUCCCAUUUGGCGGCAUGUGCCAUUUCCGCCGGCAU---UUCG-CCUGGAA
((((.(((((((((.......(((((...------.......(((...........)))..........)))))(((....)))...)))))).))).---))))-....... ( -29.35)
>DroSec_CAF1 30567 86 - 1
CCAAUUCCGGCGGGCAAUCCGGCCAAUUC------CAAUUCCUUUUCCACACCCAUUUCCCAAUCCCA-----------------UUUCCGCCGGCUU---UUCG-CCUGGAA
....((((((((((.((.(((((......------.................................-----------------.....))))).))---))))-)).)))) ( -18.60)
>DroSim_CAF1 31368 109 - 1
CCAAUUCCGGCGGGCAAUCCGGCCAAUUCCAAUUCCAAUUCCUUUUCCACACCCAUUUCCCAAUCCCAUUUGGCGGCAUGCGCCAUUUCCGCCGGCUU---UUCG-CCUGGAA
....((((((((((.((.(((((....................................((((......)))).(((....)))......))))).))---))))-)).)))) ( -29.60)
>DroEre_CAF1 31375 95 - 1
CCAAUUCCGGCGGGCAAUCUGGCCAAUUC------------------CACACCCAUUUCCCUAUCCCAUCUGGCGGCAUGUGCCAUUUCCGCCGCCUUGAAUUAGUUGUGGAA
........(((.((....)).)))..(((------------------((((.........(((...((...((((((.............)))))).))...))).))))))) ( -25.32)
>DroYak_CAF1 31905 91 - 1
CCAAUUCCGGCGGGCAAUCCGGCCAAUUC------------------CACACCCAUUUCCCAAUCCCAUUCGGCGGCAUGUGCCAUUUCCGCCGGCUU---UUCG-CCUGGAA
....((((((((((.((.(((((......------------------..................((....)).(((....)))......))))).))---))))-)).)))) ( -27.10)
>DroAna_CAF1 32126 87 - 1
CCAAUUCCAAUGCCCCACCAG----AGGC------------------CUAGCCCGUUUCCCAAUCCCAUUUGCUGGCAUGUGCCAUUUCCGACGGCCU---CCUG-CCUGAAA
.....................----((((------------------..((.(((((...(((......))).((((....)))).....))))).))---...)-))).... ( -17.20)
>consensus
CCAAUUCCGGCGGGCAAUCCGGCCAAUUC__________________CACACCCAUUUCCCAAUCCCAUUUGGCGGCAUGUGCCAUUUCCGCCGGCUU___UUCG_CCUGGAA
......(((((((((......)))..................................................(((....))).....)))))).................. (-13.53 = -14.68 +   1.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:39 2006