Locus 9675

Sequence ID 3R_DroMel_CAF1
Location 25,598,583 – 25,598,676
Length 93
Max. P 0.795017
window15461

overview

Window 1

Location 25,598,583 – 25,598,676
Length 93
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 97.17
Mean single sequence MFE -33.20
Consensus MFE -32.90
Energy contribution -32.90
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.99
SVM decision value 0.60
SVM RNA-class probability 0.795017
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25598583 93 + 27905053
AGAGAGGAGUGGAUAGCGGGAGAGACAG--AGGCAGAGGCAGCGGAAUGGAGCGAGCGGUCGGUCUUUGCCGUCGCCAGUUGCCAGUUGUUCAGU
.........((((((((.(......)..--.(((((.(((.((((...(((.(((....))).)))...)))).)))..))))).)))))))).. ( -33.60)
>DroSec_CAF1 25699 93 + 1
AGAGAGGAGCGGAUAGCGGGAGAGACAG--AGGCAGAGGCAGCGGAAUGGAGCGAGCGGUCGGUCUUUGCCGUCGCCAGUUGCCAGUUGUUCAGU
..........(((((((.(......)..--.(((((.(((.((((...(((.(((....))).)))...)))).)))..))))).)))))))... ( -33.00)
>DroSim_CAF1 26464 95 + 1
AGAGAGUAGCGGAUAGCGGGAGAGACAGAGAGGCAGAGGCAGCGGAAUGGAGCGAGCGGUCGGUCUUUGCCGUCGCCAGUUGCCAGUUGUUCAGU
..........(((((((.(......).....(((((.(((.((((...(((.(((....))).)))...)))).)))..))))).)))))))... ( -33.00)
>consensus
AGAGAGGAGCGGAUAGCGGGAGAGACAG__AGGCAGAGGCAGCGGAAUGGAGCGAGCGGUCGGUCUUUGCCGUCGCCAGUUGCCAGUUGUUCAGU
..........(((((((.(......).....(((((.(((.((((...(((.(((....))).)))...)))).)))..))))).)))))))... (-32.90 = -32.90 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:38 2006