| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,567,926 – 25,568,042 |
| Length | 116 |
| Max. P | 0.790840 |
| Location | 25,567,926 – 25,568,042 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.60 |
| Mean single sequence MFE | -45.67 |
| Consensus MFE | -28.21 |
| Energy contribution | -27.80 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.790840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25567926 116 + 27905053 AAUGGGGGGCAAAAGCUGGGCAA----ACCCAGCCUCCUCCGCGUCUCAUGAGUACGCGCAAAGGUGUCCGCACUUGGGGCACUUGGAGUGUUUGGCAAAGUACUUCUGCAGGUGCUCUA ....(.(((((...((((((...----.))))))..(((.(((((((....)).)))))...)))))))).)...(((((((((((((((((((....))))))))...))))))))))) ( -46.60) >DroPse_CAF1 49591 120 + 1 AUUCGAAUGCAGAAGCUGAGACACACUACUCAGCUUCUUCCGCGUCUCAUGAAUACGCGCACAAAUGGCCGCACUUGGGGCACUUUGAGUGUUUGGCAAAGUACUUCUGCAGAUGCUCGA ..((((....((((((((((........))))))))))...((((((((.((((((...((....))((((((((..((....))..)))))..)))...))).))))).)))))))))) ( -41.30) >DroEre_CAF1 51017 116 + 1 AAUCGGGGGCAAGAGCUGGGCAA----ACCCAGCCUCCUCCCCGUCUCAUGAGUACGCGCAAAGGUGUCCGCACUUGGGGCACUUGGAGUGCUUGGCAAAGUACUUCUGCAGGUGCUCUA ...((((((..((.((((((...----.))))))))..))))))......((((((..(((.((((((((.......))))))))(((((((((....))))))))))))..)))))).. ( -56.20) >DroYak_CAF1 54123 116 + 1 AAUGGGGGGCAAUAGCUGGGCAA----ACCCAGCCUCCUCCGCGUCUCAUGAGUACGCGCAAAGAUGUCCGCACUUGGGGCAUUUGGAGUGCUUGGCAAAGUACUUCUGCAGGUGCUCUA .((((((.((....((((((...----.)))))).......)).))))))((((((..(((.((((((((.......))))))))(((((((((....))))))))))))..)))))).. ( -49.30) >DroAna_CAF1 60979 116 + 1 AUUCGGAAAAAGGAGCUGAGAAA----ACUCAGCUUCCUCCUGGUUUCAUGAAUAGGCGCACAAAUGUCCACAUUUUGGGCAUUUCGAGUGUUUGGCGAAGUACUUCUGAAGGUGUUCGA .((((((((.((((((((((...----.))))))....))))..)))).))))(((((((.((((((((((.....))))))))).).))))))).((((.((((......)))))))). ( -38.10) >DroPer_CAF1 48636 120 + 1 AUUCGAAUGCAGAAGCUGAGACACACUACUCAGCUUCUUCCGCGUCUCAUGAAUACGCGCACAAAUGGCCGCACUUGGGGCACUUUGAGUGUUUGGCAAAGUACUUUUGGAGAUGCUCGA ..((((....((((((((((........))))))))))...(((((((..((.(((...((....))((((((((..((....))..)))))..)))...))).))...))))))))))) ( -42.50) >consensus AAUCGGAGGCAAAAGCUGAGAAA____ACCCAGCCUCCUCCGCGUCUCAUGAAUACGCGCAAAAAUGUCCGCACUUGGGGCACUUGGAGUGUUUGGCAAAGUACUUCUGCAGGUGCUCGA ..............((((((........))))))......(((((((....)).)))))...((((((((.......))))))))((((..((((.((.........))))))..)))). (-28.21 = -27.80 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:34 2006