Locus 9670

Sequence ID 3R_DroMel_CAF1
Location 25,567,242 – 25,567,348
Length 106
Max. P 0.642340
window15455

overview

Window 5

Location 25,567,242 – 25,567,348
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 74.46
Mean single sequence MFE -38.75
Consensus MFE -22.78
Energy contribution -23.03
Covariance contribution 0.25
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.59
SVM decision value 0.23
SVM RNA-class probability 0.642340
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25567242 106 + 27905053
-UAGGCAUUGCCAAAAUUCCAUUGCGCUGAGGGCAUGAUGGAUUU-UUGGACAGCGCUGGCUGGCGGUGGUGUCCUUGUG-GACGGACGUGCUUGUCCACCC-ACCCGCG
-..(((.(((((((((.((((((..((.....))..)))))).))-)))).))).))).....(((((((.((((....)-)))(((((....)))))..))-).)))). ( -46.80)
>DroPse_CAF1 49184 107 + 1
-AAACGAUUGCCAAAUAUUCAUUGCGCUAAGGGCACGAUGGAUUUUUUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUG-GGUACACACUCUCGGGCGAAU-CCCCAUG
-....((((((((((.((((((((.((.....)).)))))))).))).(((((.(((((.....))))).))))).((((-....))))......))).)))-)...... ( -36.00)
>DroYak_CAF1 53363 105 + 1
-UAGGCAUUGCCAAAAUUCCAUUGCGCUGAGGGCAUGAUGGAUUU-UUGGACAGCGCUGGCUGGCGGUGGUGUCCUUGUG-GACGGUCGUGACU-UCCACCC-ACCCGCG
-..(((.(((((((((.((((((..((.....))..)))))).))-)))).))).))).((.((.(((((.((((....)-)))(((....)))-.))))).-.)).)). ( -41.70)
>DroMoj_CAF1 54653 88 + 1
UUAGCAAUUGCAAAAAUUUCAUUGCGCUUGGCGCG---UGGAUUU-UUGGACAGCGCUGGCAGGCGGUGGUGUCAUUGUG-GUU-----------U----A--CACCACA
..........((((((((.(((.((((...)))))---)))))))-)))((((.(((((.....))))).))))..((((-((.-----------.----.--.)))))) ( -30.60)
>DroAna_CAF1 60414 106 + 1
---UGCAUUGUCAAAAUUCCAUUGCGCUGAGGGCACGAUGGAUUU-UUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUGGGACAGUGGUCGCUGCUCACCCAACCCGCG
---.((......((((.(((((((.((.....)).))))))).))-))(((((.(((((.....))))).)))))..(((((.((((....))))))))).......)). ( -41.70)
>DroPer_CAF1 48229 107 + 1
-AAACGAUUGCCAAAUAUUCAUUGCGCUAAGGGCACGAUGGAUUUUUUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUG-GGUACACACUCUCGGGCGGAU-CCCCAUG
-....((((((((((.((((((((.((.....)).)))))))).))).(((((.(((((.....))))).))))).((((-....))))......))).)))-)...... ( -35.70)
>consensus
_UAGCCAUUGCCAAAAUUCCAUUGCGCUGAGGGCACGAUGGAUUU_UUGGACAGCGCUGGCAGGCGGUGGUGUCCUUGUG_GACAGACGUGCUUGUCCACAC_ACCCACG
.................(((((((.((.....)).)))))))......(((((.(((((.....))))).)))))................................... (-22.78 = -23.03 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:33 2006