Locus 967

Sequence ID 3R_DroMel_CAF1
Location 3,154,456 – 3,154,575
Length 119
Max. P 0.835036
window1550

overview

Window 0

Location 3,154,456 – 3,154,575
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.89
Mean single sequence MFE -33.58
Consensus MFE -25.75
Energy contribution -26.62
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -2.79
Structure conservation index 0.77
SVM decision value 0.73
SVM RNA-class probability 0.835036
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3154456 119 + 27905053
AUUAAUUACUCAUCAAAUUGUGGCCACAUUAAAAGCCCCGGCUUUUUUUCGAAAGUCAUUGCCACUCGGGCUUUAAAAGGGUUAUCGUUAAGGGCGGCACAAUUGUACAUAAU-UGAUGA
.........(((((((.((((((((...((((.(((((.(((((((....)))))))...(((.....))).......)))))....)))).))).(((....))).))))))-)))))) ( -32.50)
>DroSec_CAF1 2339 120 + 1
AUUAAUUACUCAUCAAAUUGUGGCCACUUUAAAAGCACCGGCUUUUUUUCGAAAGUCAUUGCCACUCGGGUUUUAAAAGGGUUAUCGUUAAGGGCGGCACAAUUGUACAUAAUUUGAUGA
.........((((((((((((((((.((((((.(((.(((((((((....)))))))...(((.....))).......)))))....))))))..)))((....)).))))))))))))) ( -34.40)
>DroSim_CAF1 4509 119 + 1
AUUAAUUACUCAUCAAAUUGUGGCCACUUUAAAAGCCCCGGCUUUUUUUCGAAAGUCAUUGCCACUCGGGCUUUAAAAGGGUUAUCGUUAAGGGCGGCACAAUUGUACAUAAU-UGAUGA
.........(((((((.((((((((.((((((.(((((.(((((((....)))))))...(((.....))).......)))))....))))))..)))((....)).))))))-)))))) ( -34.90)
>DroYak_CAF1 1660 116 + 1
AUUAAUUACUCAUCAAAUUGUGGCCACUUUAAAAGCGCUGCCCUUUUUUCGAAAGUCAUUGCCACUCGGGUUUUAAAAGGGUUGUCUUUAAGGGCCAC---AUUAUACAUAAU-UGGUGA
.........(((((((..(((((((.(((..((((.((.((((((((..(....).....(((.....)))...)))))))).)))))))))))))))---)..........)-)))))) ( -32.50)
>consensus
AUUAAUUACUCAUCAAAUUGUGGCCACUUUAAAAGCCCCGGCUUUUUUUCGAAAGUCAUUGCCACUCGGGCUUUAAAAGGGUUAUCGUUAAGGGCGGCACAAUUGUACAUAAU_UGAUGA
.........((((((.(((((((((.((((.(((((((.(((.......(....).....)))....))))))).)))))))..((((.....))))..........)))))).)))))) (-25.75 = -26.62 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:52 2006