| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,563,156 – 25,563,254 |
| Length | 98 |
| Max. P | 0.517223 |
| Location | 25,563,156 – 25,563,254 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.76 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -13.00 |
| Energy contribution | -12.95 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25563156 98 - 27905053 CAACA-AU---------AAACUCACCCGCACUCUCUUCGUGCGAAUGUUCGCAUAUCCCGUCCUUUUGAUAAUGCCAUCCUUGGUGUGAUCCGAGUUGACUUGGCCAU ...((-(.---------.(((((...(((((.......))))).....((((.((((..........))))..((((....))))))))...)))))...)))..... ( -21.40) >DroVir_CAF1 56587 108 - 1 UUGUGCUUUGUUAUGCAUUACUAACCCGUACACGCUUAGUGCGUAUAUUUGCAUAGCCGGUGCGUUUGAUAAUGCCAUCCUUGGUGUGUUGCGAGUUUACCUCGCCGU ..(..((..((((((((.(((......))).((((.....)))).....)))))))).))..)........((((((....))))))...(((((.....)))))... ( -30.60) >DroSec_CAF1 46781 98 - 1 CCACA-AU---------AUACUCACCCGCACUCUCUUCGUGCGUAUGUUCGCAUAUCCCGUCCUUUUGAUAAUGCCAUCCUUGGUGUGAUUCGAGUCGACUUCGCCAU .....-..---------.........(((((.......)))))((((....))))....(((..(((((..((((((....))))))...)))))..)))........ ( -21.20) >DroSim_CAF1 48306 98 - 1 CCACA-CU---------AUACUCACCCGCACUCUCUUCGUGCGUAUGUUCGCGUAUCCCGUCCUUUUGAUAAUGCCAUCCUUGGUGUGAUUCGAGUUGACUUCACCAU .....-..---------((((.((..(((((.......)))))..)).....))))...(((..(((((..((((((....))))))...)))))..)))........ ( -21.60) >DroWil_CAF1 62372 98 - 1 UCACU-CU---------UAACUCACCCGUACACGCUUUGUGCGAAUAUUUGCAUAUCCUGUCCUCUUGAUAAUGCCAUCUUUUGUAUGCUCUGAGCUAACUUCGCCAU .....-.(---------((.((((..(((((((((.....))).......(((((((..(....)..))).)))).......))))))...)))).)))......... ( -16.40) >DroAna_CAF1 57779 94 - 1 ----A-AC---------AAACUCACCCGCACUCUCUUCGUGCGGAUAUUUGCGUAUCCUGUCCGCUUGAUAAUUCCAUCCUUUGUGUGAUCCGAGUUCACCUCGCCAU ----.-..---------....((((((((((.......)))))).((((.(((.........)))..))))..............))))..((((.....)))).... ( -19.10) >consensus CCACA_AU_________AAACUCACCCGCACUCUCUUCGUGCGUAUAUUCGCAUAUCCCGUCCUUUUGAUAAUGCCAUCCUUGGUGUGAUCCGAGUUGACUUCGCCAU ..........................(((((.......)))))................(((..((((...((((((....))))))....))))..)))........ (-13.00 = -12.95 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:29 2006