Locus 9667

Sequence ID 3R_DroMel_CAF1
Location 25,562,416 – 25,562,507
Length 91
Max. P 0.748288
window15449

overview

Window 9

Location 25,562,416 – 25,562,507
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 79.64
Mean single sequence MFE -17.35
Consensus MFE -12.00
Energy contribution -11.62
Covariance contribution -0.38
Combinations/Pair 1.39
Mean z-score -1.50
Structure conservation index 0.69
SVM decision value 0.47
SVM RNA-class probability 0.748288
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25562416 91 - 27905053
-----CUUUCCUCUUAACUAAGCUCCCCUGUG-CCUUAUUCGCAGUGAAUGACAAUCCCGGUUUUGUUGUCAUUGCUAAUCAUUUUGCAUUCGGCUU
-----..............(((((.....(((-(...(((.((((((.(..((((........))))..))))))).)))......))))..))))) ( -18.40)
>DroSec_CAF1 46040 91 - 1
-----CUUUCCUCUUAACUAAGCUACACUGUU-CCUUAUUCGCAGUGAAUGGCAAUCCCGGUUUUGUUGUCAUUGCUAAUCAUUUUGCAUUCGGCCU
-----................(((....(((.-....(((.((((((.(..((((........))))..))))))).)))......)))...))).. ( -15.80)
>DroSim_CAF1 47574 91 - 1
-----CUUUCCUCUUAACUAAGCUACACUGUU-CCUUAUUCGCAGUGAAUGGCAAUCCCGGUUUUGUUGUCAUUGCUAAUCAUUUUGCAUUCGGCCU
-----................(((....(((.-....(((.((((((.(..((((........))))..))))))).)))......)))...))).. ( -15.80)
>DroEre_CAF1 46939 91 - 1
-----UAUUCCCCUUAGCUAAGCUUCACUUUG-CUUUAUUCGUAGUGAAUGGCAAUUCCAGUUUUGUUGUCAUUGCUAAUCACUUUGCAUUUCGCUU
-----..........(((.((((........)-))).....(((((((.(((((((..(((.....)))..))))))).)))))..)).....))). ( -19.80)
>DroYak_CAF1 49968 91 - 1
-----CUUUCCUCAUAACUAAGCUUCACUGUA-CUUUAUUCGUAGUGAAUGGCAAUAUAACUUUUGUUGUCAUUGCUAAUCAUUUUGCAUUUGGCUU
-----..............(((((....((((-..........(((((.((((((((((((....))))).))))))).))))).))))...))))) ( -18.90)
>DroAna_CAF1 57056 94 - 1
AUAAAUUUUUCUAU-UACUGAUUUUCACUGUGUCGGUGCUCCCAGUGAAUGGCAAAUGCGCUUUUGUUAUUGUUGGUUAUCAUUUUGCAUUCGA--A
..............-(((((((.........)))))))...((((..(.(((((((......))))))))..))))..................--. ( -15.40)
>consensus
_____CUUUCCUCUUAACUAAGCUUCACUGUG_CCUUAUUCGCAGUGAAUGGCAAUCCCGGUUUUGUUGUCAUUGCUAAUCAUUUUGCAUUCGGCUU
.....................(((....((((.....(((.(((((((.((((((........))))))))))))).))).....))))...))).. (-12.00 = -11.62 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:28 2006