Locus 9665

Sequence ID 3R_DroMel_CAF1
Location 25,556,188 – 25,556,307
Length 119
Max. P 0.688544
window15446

overview

Window 6

Location 25,556,188 – 25,556,307
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.87
Mean single sequence MFE -37.22
Consensus MFE -24.41
Energy contribution -24.92
Covariance contribution 0.51
Combinations/Pair 1.33
Mean z-score -1.26
Structure conservation index 0.66
SVM decision value 0.32
SVM RNA-class probability 0.688544
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25556188 119 + 27905053
UGCUUUCCGAAGAGAGCAUCGCCAGCUUUAAGAAGUGGAUGCAGCACAACUGGUACACAGUAGCCUUAGCUGCUGUAGGCGUUAUACUGCUCCUGGUAAGUAACAC-UGCAGGAAACUGG
(((((((....)))))))..((((((((....))))(((.((((...(((..((..((((((((....))))))))..)))))...))))))))))).........-..(((....))). ( -40.00)
>DroVir_CAF1 48906 120 + 1
UGCUAUCUGAGGAGAGCAUUGCCACCUUCAAGAAAUGGGUGCAGCAUCAUUGGUACACGGUGGCUCUGGCCGCCGUUGGCGUAUUUUUGUUGCUGGUAUGUGAAGGGAACAUGAAACUAG
((((.((....)).))))....(((((.........)))))(((((.((..(((((((((((((....))))))))....)))))..)).))))).(((((.......)))))....... ( -39.30)
>DroPse_CAF1 39038 114 + 1
UGCUCUCGGAGGAGAGCAUUGCCACAUUCAAGAAGUGGAUGCAGCACAACUGGUAUACAGUGGCUUUGGCCGCCAUUGGCGUCAUUUUGUUGCUGGUAAGUGGCAC------GAAUUUGG
(((((((....))))))).(((((((((((.....))))).((((((((...(....(((((((.......)))))))....)...))).)))))....)))))).------........ ( -41.30)
>DroMoj_CAF1 44514 110 + 1
UGCUCUCCGAGGAGAGUAUUGCUACCUUCAAGAAGUGGGUGCAGAAUCAUUGGUACACUGUAGCUCUGGCCGCUAUUGGCGUCUUCUUAUUACUGGUAUGUGAU--------GAAUCU--
(((((((....))))))).(((.((((.(.....).)))))))((.((((((((((...((((....((.(((.....))).)).....))))..)))).))))--------)).)).-- ( -30.60)
>DroAna_CAF1 50682 115 + 1
UGCUUUCUGAGGAGAGCAUCGCCACAUUCAAGAAGUGGAUGCAGGAGAAUUGGUACACAGUAGCCCUGGCGGCAAUUGGCGUCAUUAUGCUUAUGGUGAGUAACCC-AACUAGGA----G
(((((((....)))))))((((((.(((((.....)))))(((((...((((.....))))..)).(((((.(....).)))))...)))...)))))).....((-.....)).----. ( -31.00)
>DroPer_CAF1 38071 114 + 1
UGCUCUCAGAGGAGAGCAUUGCCACAUUCAAGAAGUGGAUGCAGCACAACUGGUAUACAGUGGCUUUGGCCGCCAUUGGCGUCAUUUUGUUGCUGGUAAGUGGCAC------GAAUUUGG
(((((((....))))))).(((((((((((.....))))).((((((((...(....(((((((.......)))))))....)...))).)))))....)))))).------........ ( -41.10)
>consensus
UGCUCUCCGAGGAGAGCAUUGCCACAUUCAAGAAGUGGAUGCAGCACAACUGGUACACAGUAGCUCUGGCCGCCAUUGGCGUCAUUUUGUUGCUGGUAAGUGACAC______GAAUCUGG
(((((((....)))))))((((((....(((((....(((((........((.....))(((((....))))).....))))).)))))....))))))..................... (-24.41 = -24.92 +   0.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:25 2006