| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,553,677 – 25,553,784 |
| Length | 107 |
| Max. P | 0.739131 |
| Location | 25,553,677 – 25,553,784 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.53 |
| Mean single sequence MFE | -41.37 |
| Consensus MFE | -22.53 |
| Energy contribution | -24.12 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.739131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25553677 107 + 27905053 GCAGUUCACCGGCGGAGGACUCAACUCCGCCACUCCCGCCAAGACGCACUGCGCCAGCGAAAAGCUGAGGAAGAAGCGGUGGCUGCCAGAGGAGGUGAGUAUCCGAA (((((.(((((((((((.......))))))).((.((.......(((...))).((((.....)))).)).))....)))))))))....(((........)))... ( -41.90) >DroPse_CAF1 36622 104 + 1 GCACCUC---GGAGGCGGUCUGAGCUCCCAGGUGCCAACAAAGACGCACUGUGCCAGCGAAAAGUUGAGAAAAAAACGUUGGCUGCCAGAGGAGGUAAGCAAUUGCC ...((((---((..((.......))..)).(((((((((......((.....))((((.....))))..........)))))).))).)))).(((((....))))) ( -36.70) >DroSec_CAF1 37261 107 + 1 GCAGUUCACCGGCGGAGGAAUUAACUCCGCCGCUCCCGCCAAGACGCACUGCGCCAGCGAGAAGCUGAGGAAGAAGCGCUGGCUCCCAGAGGAGGUGAGUAGCUGGA ((..(((((((((((((.......)))))))..(((.((......)).(((.(((((((.....((.....))...)))))))...))).)))))))))..)).... ( -47.30) >DroYak_CAF1 41119 107 + 1 GCAGUUCACCGGCGGAGGACUCAACUCCGCCACUCCCGCCAAGACGCACUGCGCCAGCGAGAAGCUGAGAAAGAAGCGCUGGCUGCCAGAGGAGGUGAGUAUUCGCA (((((((((((((((((.......)))))))..(((.((......)).(((((((((((.....((.....))...))))))).).))).))))))))..))).)). ( -45.20) >DroAna_CAF1 48386 102 + 1 GCAGUUCACUGGCGGAGGUGUCAGUUCCGCAGCUCCGGCCAAAACGCACUGCGCCAGUGAGAAGCUGCGAAAGAAGCGGUGGCUGCCAGAGGAGGUGAGUU-----A .((.(((.(((((((((.(((.......))).))))(((((...(.(((((...))))).)..(((.(....).)))..))))))))))..))).))....-----. ( -41.00) >DroPer_CAF1 35660 104 + 1 GCACCUC---GGAGGCGGUCUGAGCUCCCAGGUGCCAACAAAGACGCACUGCGCUAGCGAAAAGUUGAGAAAAAAACGUUGGCUGCCAGAGGAGGUAAGCAAUUGCC ...((((---((..((.......))..)).(((((((((.....(((.........)))....(((........))))))))).))).)))).(((((....))))) ( -36.10) >consensus GCAGUUCACCGGCGGAGGACUCAACUCCGCCGCUCCCGCCAAGACGCACUGCGCCAGCGAAAAGCUGAGAAAGAAGCGCUGGCUGCCAGAGGAGGUGAGUAAUUGCA ....(((((..((((((.......))))))..((((.((......)).(((.(((((((.....((.....))...)))))))...))).)))))))))........ (-22.53 = -24.12 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:24 2006