Locus 9663

Sequence ID 3R_DroMel_CAF1
Location 25,553,050 – 25,553,140
Length 90
Max. P 0.752403
window15444

overview

Window 4

Location 25,553,050 – 25,553,140
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 94.22
Mean single sequence MFE -25.26
Consensus MFE -24.62
Energy contribution -24.10
Covariance contribution -0.52
Combinations/Pair 1.19
Mean z-score -1.12
Structure conservation index 0.97
SVM decision value 0.48
SVM RNA-class probability 0.752403
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25553050 90 - 27905053
CAGCCUGUGGGUGUAGCCUGUAAGAGGAAGGGGGCAUUUUAGGGGUUAGUGGGAGCGGGAGAAAGCUGCCAGCGGCGAUGACAAGAUGAA
..(((.((.....((((((.(((((...........))))).)))))).(((.(((........))).)))))))).............. ( -23.90)
>DroSec_CAF1 36634 90 - 1
CAGCCUGUGGGUGUAGCCUGUAAGAGGAAGGGGACAGCUCAGGGGUUAGUGGGAGCGGGUGAAAGCUGCCAGCGGCGAUGACAAGAUGAA
.(((((.(((((((..(((.........)))..))).)))).)))))..(((.(((........))).)))................... ( -26.50)
>DroSim_CAF1 37941 90 - 1
CAGCCUGUGGGUGUAGCCUGUAAGAGGAAGGGGACAGCUCAGGGGUUAGUGGGAGCGGGAGAAAGCUGUCAGCGGCGAUGACAAGAUGAA
.(((((.(((((((..(((.........)))..))).)))).)))))..(((.(((........))).)))................... ( -24.10)
>DroEre_CAF1 37482 90 - 1
CAGCCUGUGGGUGUAGCCUGCAAGAAGAAGGGGGCAUCUCAGGGGUUAGUGGGAGCGGGAGAAAGCUGCCAGCGGCAAUGACAAGAUGAA
.(((((.((((....((((.(........).))))..)))).)))))..(((.(((........))).)))................... ( -27.50)
>DroYak_CAF1 40492 90 - 1
CAGCCUGUGGGUGUAGCCUGCAAGAAGAAGAUGGCAUCUCAGGGGUUAGUGGGAGCGGGAGAAAGCUGCCAGCGGCGAUGACAAGAUGAA
..(((((..((.....))..)).......(.((((((((((........)))))((........))))))).)))).............. ( -24.30)
>consensus
CAGCCUGUGGGUGUAGCCUGUAAGAGGAAGGGGGCAUCUCAGGGGUUAGUGGGAGCGGGAGAAAGCUGCCAGCGGCGAUGACAAGAUGAA
.(((((.(((((((..(((.........)))..))).)))).)))))..(((.(((........))).)))................... (-24.62 = -24.10 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:23 2006