Locus 9658

Sequence ID 3R_DroMel_CAF1
Location 25,542,814 – 25,542,916
Length 102
Max. P 0.506904
window15436

overview

Window 6

Location 25,542,814 – 25,542,916
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 89.31
Mean single sequence MFE -37.88
Consensus MFE -29.16
Energy contribution -30.76
Covariance contribution 1.60
Combinations/Pair 1.15
Mean z-score -1.44
Structure conservation index 0.77
SVM decision value -0.05
SVM RNA-class probability 0.506904
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25542814 102 + 27905053
CAAGCUGAACUGGCGCCAUCUGUCGCGAGGUGGCGAAAUCGGGAGAGCGAGACCUGACUAGUUCAUGCAGUGGCGCCAUCCGUCGUCUAGCAGCGAAAGCAA
.....((((((((((((((((......))))))))...(((((.........)))))))))))))((((((((((.....))))).)).)))((....)).. ( -39.30)
>DroSec_CAF1 26460 102 + 1
CACGCUGAACUGGCGCCAUCUGUCGCGAGGUGGUGAAACCGGGAGAGCGAGACCUGGCUAGUUCAUGCAGUGGCGCCAUCCGUCGUCUAGCAGCGAAAGCAA
...((((.((((((((((.(((((....)...(((((.(((((.........)))))....)))))))))))))))))......)).)))).((....)).. ( -39.10)
>DroSim_CAF1 26744 102 + 1
CAAGCUGAACUGGCGCCAUCUGUCGCGAGGUGGCUAAACCGGGAGAGCGAGACCUAGCUAGUUCGUGCAGUGGCGCCAUCCGUCGUCUAGCAGCGAAAGCGA
...((((.((((((((((.(((.((((((.((((((....((..........)))))))).)))))))))))))))))......)).)))).((....)).. ( -45.80)
>DroEre_CAF1 27318 102 + 1
CAAACUGAACUUGCGCCAUCUGUUGUUUGGCGGCGAAACCGAGAGAGCGAGACCUGGCUAUUUCAUGCAGUGGCGCCAUCUGUCGUCUAGUAACGAAAUCAA
.....(((....((((((.((((........((.....))((((.(((.(....).))).))))..))))))))))......((((......))))..))). ( -26.40)
>DroYak_CAF1 29448 102 + 1
CAAACUGAACUGGCGCCAUCUGUCGUCAGGUGGCGAAACCGGGAGAUCGAGACUUGGCUAGUUCAAGCAGUGGCGCCAUCUGUCGUUUAGCAGCGAAAGCAA
.(((((((((((((((((((((....)))))))).....(((....))).......))))))))).((((((....)).)))).))))....((....)).. ( -38.80)
>consensus
CAAGCUGAACUGGCGCCAUCUGUCGCGAGGUGGCGAAACCGGGAGAGCGAGACCUGGCUAGUUCAUGCAGUGGCGCCAUCCGUCGUCUAGCAGCGAAAGCAA
...((((.((((((((((.(((.((((((.(((.....(((((.........)))))))).)))))))))))))))))......)).)))).((....)).. (-29.16 = -30.76 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:16 2006