| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,536,347 – 25,536,444 |
| Length | 97 |
| Max. P | 0.998472 |
| Location | 25,536,347 – 25,536,444 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 65.66 |
| Mean single sequence MFE | -31.84 |
| Consensus MFE | -13.80 |
| Energy contribution | -15.08 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.43 |
| SVM decision value | 3.11 |
| SVM RNA-class probability | 0.998472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25536347 97 + 27905053 ---AUUUCGCCUGCACAUUGCGCAUACGCCACAUUGGCCAC-UGAAAG-UACACAAGUAUGUGUAUGU--------------GUAUGUGUAUGUGUAUGUGCAAUUGCAAUGUGAG ---...((((.((((.((((((((((((((((((....(((-.....(-((((((....)))))))))--------------).)))))...)))))))))))))))))..)))). ( -37.30) >DroPse_CAF1 18027 113 + 1 CGGCAUUCGCAUUCGCAUUGCGCAUACGCCAUGUAGGUCCUUUGAAUACUACAAUACUAUGUGUAUAUCUCUGUACGCUCUCGUAAGUGUCUGUGUCUGUGCUUGUG---UGUGUG ..((((.((((..((((..(((((.((((..(((((.((....))...))))).(((...(((((((....)))))))....))).)))).))))).))))..))))---.)))). ( -33.60) >DroSim_CAF1 20230 87 + 1 ---AUUUCGCCUGCACAUUGCGCAUACGCCACAUUGGCCUC-UGAAGA-UACACAAGUAUGUAU------------------------GUAUGUGUAUGUGCAUUUGCAAUGUGAG ---.....((.(((((((.(((((((((((.....)))...-.....(-((((......)))))------------------------)))))))))))))))...))........ ( -28.40) >DroYak_CAF1 21767 88 + 1 ---AAUUCGCAUUCACAUUGCGCAUACGCCACAUUGGCCAC-CGAAAG-UAUACAAGU-UCCAUAUG--------------------UGUAC-CAUAUGUGCAAUUG-CAUGUGAG ---...((((((.((.((((((((((.(((.....)))...-.....(-((((((...-......))--------------------)))))-..))))))))))))-.)))))). ( -28.80) >DroPer_CAF1 17995 113 + 1 CGGCAUUCGCAUUCGCAUUGCGCAUACGCCAUGUAGGUCCUUUGAAUACUACAAUACUAUAUGUAUAUCUCUGUACGUCCUCGUAAGUGUCUGUGUCUGUGCUUGUG---UGUGUG ..((((.((((..((((..(((((.((((..(((((.((....))...))))).(((...(((((((....)))))))....))).)))).))))).))))..))))---.)))). ( -31.10) >consensus ___AAUUCGCAUUCACAUUGCGCAUACGCCACAUUGGCCAC_UGAAAA_UACACAAGUAUGUGUAUAU______________GUA_GUGUAUGUGUAUGUGCAUUUG__AUGUGAG .............(((((((((((((((((.....)))...........((((........)))).............................)))))))))......))))).. (-13.80 = -15.08 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:14 2006