Locus 9655

Sequence ID 3R_DroMel_CAF1
Location 25,534,014 – 25,534,116
Length 102
Max. P 0.623405
window15433

overview

Window 3

Location 25,534,014 – 25,534,116
Length 102
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 89.91
Mean single sequence MFE -41.34
Consensus MFE -33.02
Energy contribution -33.30
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.47
Structure conservation index 0.80
SVM decision value 0.18
SVM RNA-class probability 0.623405
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25534014 102 + 27905053
CCGCCACUUCGGCAGGACCUCUGUAUGCGGGUCCUUCGGGGAUCCUGGA--------GUCCUUUCUGCUCCUCGAGAUUCAAAAUGUCGAGACAAAGGCUGCGGCGGCAA
(((((.((((((.(((((((........))))))))))))).....(.(--------(.(((((......(((((.((.....)).)))))..))))))).))))))... ( -39.30)
>DroSec_CAF1 17685 102 + 1
CCGCCACUUCCGCAGGACCUCUGGUUGCGGGUCCUUCGGGGAUCCUGGA--------GUCCUUUCUGCUCCUCGAGAUUCAAAAUGUCGAGACAAAGGCUGCGGCGGCAA
(((((.(..((((((((.....((((.(((((((....)))..)))).)--------).)).))))))..(((((.((.....)).))))).....))..).)))))... ( -39.40)
>DroSim_CAF1 17899 102 + 1
CCGCCACUUCCGCAGGACCUCUGGUUGCGGGUCCUUCGGGGAUCCUGGA--------GUCCUUUCUGCUCCUCGAGAUUCAAAAUGUCGAGACAAAGGCUGCGGCGGCAA
(((((.(..((((((((.....((((.(((((((....)))..)))).)--------).)).))))))..(((((.((.....)).))))).....))..).)))))... ( -39.40)
>DroEre_CAF1 18525 109 + 1
CCGCCACUUCCGCAGGAGCUCGGGAUGCGGGUCCUCCGGGGAUCCUGGAGUCCUGGAGUCCUUUCUGCUCCUCGAGAG-CAAAAUGUCGAGACAAAAGCUGCGGCGGCAA
..(((....((((((((((..(((((.((((..(((((((...))))))).))))..)))))....))))(((((.(.-.....).))))).......)))))).))).. ( -49.70)
>DroYak_CAF1 19281 101 + 1
UCGCCAUUUUCGCAGGACCUCGGGACGCGGAUCCUUCGGGGAUCCUGGA--------GUCCUUGCUGCUCCUCGAGAG-CCAAAUGUCGAGACAAAAGCUGCGGCGGCAA
(((((........(((((..((((((.(.((....)).).).)))))..--------))))).((.(((.(((((.(.-.....).))))).....))).)))))))... ( -38.90)
>consensus
CCGCCACUUCCGCAGGACCUCUGGAUGCGGGUCCUUCGGGGAUCCUGGA________GUCCUUUCUGCUCCUCGAGAUUCAAAAUGUCGAGACAAAGGCUGCGGCGGCAA
(((((......((((((...........((((((.....)))))).(((.........))).))))))..(((((.((.....)).)))))...........)))))... (-33.02 = -33.30 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:13 2006