| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,529,393 – 25,529,497 |
| Length | 104 |
| Max. P | 0.705188 |
| Location | 25,529,393 – 25,529,497 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.42 |
| Mean single sequence MFE | -26.15 |
| Consensus MFE | -18.28 |
| Energy contribution | -18.37 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25529393 104 - 27905053 ---------------GGAGAACAGAUCACAGCGAACAGCGAACGUAGAACUGAGCAGCGGGCGAUAAAAGACAAAAUAACUUUGUUAACGAGGUCCUUAAGGACAUGCACACGCCCGGC ---------------...(..(((.((((.((.....))....)).)).)))..)..((((((......((((((.....))))))...(..((((....))))...)...)))))).. ( -27.60) >DroSec_CAF1 13010 104 - 1 ---------------GGAGAACAGAGCACAGCGAGCAGCGAACGUAGAACUGAGCAGCGGGCGAUAAAAGACAAAAUAACUUUGUUAACGAGGUCCUUAAGGACAUGCACACGCCCGCU ---------------..........((.(((....(.((....)).)..))).))((((((((......((((((.....))))))...(..((((....))))...)...)))))))) ( -30.80) >DroSim_CAF1 13050 104 - 1 ---------------GGAGAACAGAGCACAGCGAACAGCGAACGUAGAACUGAGCAGCGGGCGAUAAAAGACAAAAUAACUUUGUUAACGAGGUCCUUAAGGACAUGCACACGCCCGCU ---------------...(..(((..(((.((.....))....)).)..)))..)((((((((......((((((.....))))))...(..((((....))))...)...)))))))) ( -30.00) >DroEre_CAF1 13379 104 - 1 ---------------GGAGAACAGAGAACAGAGAACAGCCAGCGGAGAACUGAGCAGCGGGCGAUAAAAGACAAAAUAACUUUGUUAACGAGGUCCUUAAGGACAUGCACACGCCCGGU ---------------......................(((((.......))).))..((((((......((((((.....))))))...(..((((....))))...)...)))))).. ( -26.20) >DroWil_CAF1 23708 106 - 1 AAAAUUGAGCAUCCAGCCAACCAGCCAA------CCAGCC-------AUCCCAGCAUUGGGUUAUAAAAGACAAAAUAACUUUGUUAACGAGGUCCUUAAGCACAGGCACACGCACACC ........((.....((......))...------...(((-------..(((......))).................((((((....))))))...........)))....))..... ( -16.10) >DroYak_CAF1 14323 97 - 1 ---------------GGAGAACAGCGAACAGCG-------AACGGAGAACUGAGCAGCGGGCGAUAAAAGACAAAAUAACUUUGUUAACGAGGUCCUUAAGGACAUGCACACGCCCGUU ---------------........((.....))(-------..(((....)))..)((((((((......((((((.....))))))...(..((((....))))...)...)))))))) ( -26.20) >consensus _______________GGAGAACAGAGAACAGCGAACAGCGAACGUAGAACUGAGCAGCGGGCGAUAAAAGACAAAAUAACUUUGUUAACGAGGUCCUUAAGGACAUGCACACGCCCGCU .........................................................((((((......((((((.....))))))...(..((((....))))...)...)))))).. (-18.28 = -18.37 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:12 2006