Locus 9650

Sequence ID 3R_DroMel_CAF1
Location 25,517,663 – 25,517,764
Length 101
Max. P 0.946700
window15427

overview

Window 7

Location 25,517,663 – 25,517,764
Length 101
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.39
Mean single sequence MFE -26.88
Consensus MFE -22.05
Energy contribution -21.80
Covariance contribution -0.25
Combinations/Pair 1.07
Mean z-score -1.66
Structure conservation index 0.82
SVM decision value 1.36
SVM RNA-class probability 0.946700
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25517663 101 + 27905053
GCCAUGCCAACCAGCGGCGAGGUCGCAACAACAACGCUUUUGGUUGGCUAUUCCAUUAGCCCAAAAGC----CGAGA-GCCCCAAGCGCUCACG-----CACACAG-CAAGC--------
(((.((((.......)))).))).((.........(((((((((((((((......)))))....)))----)))))-)).....(((....))-----).....)-)....-------- ( -33.20)
>DroPse_CAF1 12663 119 + 1
GCCAUGCCAACCAGCAGCGAGGUCGCAACAACAACGCUUUUGGUUGGCUAUUCCGCUACUCCAUUCGCACAGC-AAGACCCCAAAGCUCUCUCGAAACGCACACGAACACACAAACACAU
((...(((((((((.((((..((.......))..)))).)))))))))...............((((...(((-...........)))....))))..)).................... ( -26.70)
>DroAna_CAF1 12608 92 + 1
GCCAUGCCAACCAGCGGCGAGGUCGCAACAACAACGCUUUUGGUUGGCUAUUCCAUAAGC--------------AAG-GCCCAAAGCUCUCUCA-----CACACAGACACGC--------
(((..(((((((((.((((..((.......))..)))).)))))))))(((...)))...--------------..)-))..............-----.............-------- ( -23.20)
>DroPer_CAF1 12437 119 + 1
GCCAUGCCAACCAGCAGCGAGGUCGCAACAACAACGCUUUUGGUUGGCUAUUCCGCUACUCCAUUCGCACAGC-AAGACCCCAAAGCUCUCUCAAAACGCACACGAACACACAAACACAU
((...(((((((((.((((..((.......))..)))).)))))))))......(((.............)))-........................)).................... ( -24.42)
>consensus
GCCAUGCCAACCAGCAGCGAGGUCGCAACAACAACGCUUUUGGUUGGCUAUUCCACUACCCCAUUCGC____C_AAG_CCCCAAAGCUCUCUCA_____CACACAAACACAC________
.....(((((((((.((((..((.......))..)))).)))))))))........................................................................ (-22.05 = -21.80 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:08 2006