Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,153,924 – 3,154,037 |
Length | 113 |
Max. P | 0.853227 |
Location | 3,153,924 – 3,154,037 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.56 |
Mean single sequence MFE | -38.38 |
Consensus MFE | -33.09 |
Energy contribution | -32.52 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.13 |
Mean z-score | -1.85 |
Structure conservation index | 0.86 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3153924 113 - 27905053 GGGCUAAUGAUGCAGCCGCAACCUGCGGACCGACCGCUGAUGGAGCUGUAAAUUUGCAACUCAAAUGCAAACAGCGAAGAG-------UAAACGCUCGGCGAUCGCAAUCAGCGGCGCCG .(((...........((((.....))))...(.((((((((...(((((....(((((.......))))))))))...(((-------(....)))).((....)).)))))))))))). ( -40.90) >DroSec_CAF1 1813 113 - 1 GGGCUAAUGAUGCAGCCGAAACCUGCAGACCGACCACUGAUGGAGCUGUAAAUUUGCAACACAAAUGCAAACAGCGAACAG-------UAAACGCUCGGCGAUCGCAAUCAGCGGCGCCG ((((......(((((.......)))))........((((.....(((((....(((((.......))))))))))...)))-------)....))))((((.((((.....)))))))). ( -36.50) >DroSim_CAF1 3983 113 - 1 GGGCUAAUGAUGCAGCCGCAACCUGUGGACCGACCACUGAUGGAGCUGUAAAUUUGCAAGACAAAUGCAAACAGCGAACAG-------UAAACGCUCGGCGAUCGCAAUCAGCGGCGCCG .((((........))))((..((.((((.....))))....)).(((((....(((((.......))))))))))......-------.....)).(((((.((((.....))))))))) ( -37.10) >DroYak_CAF1 1106 120 - 1 GAGCUAAUGAUGCAGCCGCAACCUGCGGGCCGACCGCUGAUGGAGCUGUAAAUUUGCAACACAAAUGCAAACAGCGAACAGUAAACAGUAAACGCUCGGCGAUCGCAAUCAGCAGCGCCG ..(((..((((((..((((.....))))(((((.(((((.((..(((((....(((((.......))))))))))...)).....)))....)).)))))....)).))))..))).... ( -39.00) >consensus GGGCUAAUGAUGCAGCCGCAACCUGCGGACCGACCACUGAUGGAGCUGUAAAUUUGCAACACAAAUGCAAACAGCGAACAG_______UAAACGCUCGGCGAUCGCAAUCAGCGGCGCCG ((((......(((((.......)))))......(((....))).(((((....(((((.......))))))))))..................))))((((.((((.....)))))))). (-33.09 = -32.52 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:46 2006