Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,517,489 – 25,517,585 |
Length | 96 |
Max. P | 0.991632 |
Location | 25,517,489 – 25,517,585 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 66.95 |
Mean single sequence MFE | -28.30 |
Consensus MFE | -17.25 |
Energy contribution | -16.70 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.20 |
Mean z-score | -1.71 |
Structure conservation index | 0.61 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25517489 96 + 27905053 CAGCUGGAAAUGAAAAGCAAGUGGCGAUGUGCCACAACCUAAGGUAGAAACUUUAGUUUUUCAAAAACAGGGGCCUGGGAA--UUUUAGAUAUCCCCC--------------------- ...(((....((((((((..(((((.....)))))....((((((....))))))))))))))....)))......((((.--.........))))..--------------------- ( -25.80) >DroPse_CAF1 12332 113 + 1 CAACUGGAAAUGAAAAGCAAGUGGCAAUAUGCCAAAAGCCAAAGGA-AAACUUUGGCCUG--GAGAGCAG---ACUAGGCCCCUACUUCAUACCCAGCCGCAACCCCCGCUAUCUCUUU ...((((..(((((..((...((((.....))))...)).((((..-...))))((((((--(.......---.))))))).....)))))..))))..((.......))......... ( -29.50) >DroPer_CAF1 12100 113 + 1 CAACUGGAAUUGAAAAGCAAGUGGCAAUAUGCCAAAAGCCAAAGGA-AAACUUUGGCCUG--GAGAGCAG---ACUAGGCCCCUGCUUCAUACCCAUCCGCCACCCCCGCUCUCUCUUU ...............(((..(((((......(((...(((((((..-...))))))).))--).((((((---.........))))))...........)))))....)))........ ( -29.60) >consensus CAACUGGAAAUGAAAAGCAAGUGGCAAUAUGCCAAAAGCCAAAGGA_AAACUUUGGCCUG__GAGAGCAG___ACUAGGCCCCUACUUCAUACCCACCCGC_ACCCCCGCU_UCUCUUU ...((((..............((((.....))))...(((((((......))))))).................))))......................................... (-17.25 = -16.70 + -0.55)
Location | 25,517,489 – 25,517,585 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 66.95 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -18.96 |
Energy contribution | -20.63 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.17 |
Mean z-score | -1.85 |
Structure conservation index | 0.54 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25517489 96 - 27905053 ---------------------GGGGGAUAUCUAAAA--UUCCCAGGCCCCUGUUUUUGAAAAACUAAAGUUUCUACCUUAGGUUGUGGCACAUCGCCACUUGCUUUUCAUUUCCAGCUG ---------------------.((((((.......)--)))))......(((....((((((.((((.((....)).))))((.(((((.....)))))..))))))))....)))... ( -23.40) >DroPse_CAF1 12332 113 - 1 AAAGAGAUAGCGGGGGUUGCGGCUGGGUAUGAAGUAGGGGCCUAGU---CUGCUCUC--CAGGCCAAAGUUU-UCCUUUGGCUUUUGGCAUAUUGCCACUUGCUUUUCAUUUCCAGUUG ...((((.((((((((..((((((((((...........)))))).---))))...)--)(((((((((...-..))))))))).((((.....))))))))))))))........... ( -41.10) >DroPer_CAF1 12100 113 - 1 AAAGAGAGAGCGGGGGUGGCGGAUGGGUAUGAAGCAGGGGCCUAGU---CUGCUCUC--CAGGCCAAAGUUU-UCCUUUGGCUUUUGGCAUAUUGCCACUUGCUUUUCAAUUCCAGUUG ...((((.((((((((.(((((((((((.((...))...))))).)---)))))..)--)(((((((((...-..))))))))).((((.....))))))))))))))........... ( -40.50) >consensus AAAGAGA_AGCGGGGGU_GCGGAUGGGUAUGAAGAAGGGGCCUAGU___CUGCUCUC__CAGGCCAAAGUUU_UCCUUUGGCUUUUGGCAUAUUGCCACUUGCUUUUCAUUUCCAGUUG ........................(((...((((((((......................(((((((((......))))))))).((((.....)))))))))))).....)))..... (-18.96 = -20.63 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:07 2006