Locus 9647

Sequence ID 3R_DroMel_CAF1
Location 25,511,486 – 25,511,581
Length 95
Max. P 0.774703
window15422

overview

Window 2

Location 25,511,486 – 25,511,581
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 78.09
Mean single sequence MFE -30.93
Consensus MFE -18.59
Energy contribution -20.20
Covariance contribution 1.61
Combinations/Pair 1.11
Mean z-score -1.74
Structure conservation index 0.60
SVM decision value 0.54
SVM RNA-class probability 0.774703
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25511486 95 - 27905053
CGACAAGGUCAGGGCCUUCGUGAAGGCCAAGGCGGAGGAGGCCAAAAAGAAGGCCGCCUAGGUCUGAAUUUUCGGUCUCAACCAAUAAAAUGUGU
..(((..(((..((((((....))))))..)))((..((((((.((((..(((((.....)))))...)))).))))))..)).......))).. ( -38.10)
>DroPse_CAF1 5608 80 - 1
CGACAAGGUGAAGGCCUUCGUCAAGGCCAAGCAUGAGGCGGCCAAGGCCA---GCGCUUAGGAUCUGA-----------GACCAAUAAAA-GUGU
......(((...((((((....)))))).....(((((((((....))).---)).))))........-----------.))).......-.... ( -23.30)
>DroSec_CAF1 5275 95 - 1
CGACAAGGUCAGGGCCUUCGUGAAGGCCAAGGCGGAGGAGGCCAAGAAGAAGGCCGCCUAGGUCCGGAUGUUCGGUCUCAACCAAUAAAGUGUGU
..(((..(((..((((((....))))))..)))(((((.((((........)))).))).((.((((....)))).))...)).......))).. ( -33.70)
>DroSim_CAF1 6291 95 - 1
CGACAAGGUCAGGGCCUUCGUGAAGGCCAAGGCGGAGGAGGCCAAGAAGAAGGCCGCCUAGGUCUGGAUGUUCGGUCUCAACCAAUAAAGUGUGU
..(((..(((..((((((....))))))..)))((..((((((.((....(((((.....))))).....)).))))))..)).......))).. ( -35.30)
>DroEre_CAF1 5406 95 - 1
CGACAAGGUCAAGGCCUUCGUAAAGGCCAAGGCGGAGGAGGCCAAGAAGCAGGCCGCCUAGGUAUUGAUGUUCAGUGGCCCCCAAUAAAGUGUGU
..(((..(((..((((((....))))))..)))...((.(((((...((((.(((.....))).....))))...))))).)).......))).. ( -31.90)
>DroPer_CAF1 5581 80 - 1
CGACAAGGUGAAGGCCUUCGUCAAGGCCAAGCAUGAGGCGGCCAAGGCCA---GCGCUUAGGAUCUGA-----------GACCAAUAAAA-GUGU
......(((...((((((....)))))).....(((((((((....))).---)).))))........-----------.))).......-.... ( -23.30)
>consensus
CGACAAGGUCAAGGCCUUCGUGAAGGCCAAGGCGGAGGAGGCCAAGAAGAAGGCCGCCUAGGUCCGGAUGUUCGGUCUCAACCAAUAAAAUGUGU
......(((...((((((....))))))..(((..(((.((((........)))).)))..)))................)))............ (-18.59 = -20.20 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:04 2006