| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,496,598 – 25,496,695 |
| Length | 97 |
| Max. P | 0.738564 |
| Location | 25,496,598 – 25,496,695 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 74.04 |
| Mean single sequence MFE | -31.86 |
| Consensus MFE | -13.24 |
| Energy contribution | -14.64 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25496598 97 - 27905053 CCAGGUGAGUGGUGCAUUUGUG--UG--UGCUUCGGUUACAGGUAAGUGUGGGAACGUGAGAACCCAGCUGCCG-AUGGCUGGUACUUCAUGGUGCCAGCUU ....((((.(((.((((.....--.)--))).))).)))).((((.((.((((..(....)..)))))))))).-..((((((((((....)))))))))). ( -39.60) >DroSec_CAF1 1475 97 - 1 CCAGGUGAGUGGUGCAUUUGUG--UG--UGCUUCGAUUACAGGUAAGUGUGGGAACGUGAGAACCCAGCUGCCG-AUGGCUGGUACUUCAUGGUGCCAGCUU ....((((..((..(((....)--))--..))....)))).((((.((.((((..(....)..)))))))))).-..((((((((((....)))))))))). ( -38.20) >DroSim_CAF1 1475 97 - 1 CCAGGUGAGUGGUGCAUUUGUG--UG--UGCUUCGAUUACAGGUAAGUGUGGGAACGUGAGAACCCAGCUGCUG-AUGGCUGGUACUUCAUGGUGCCAGCUU ....((.((..(((((((((..--((--((.......))))..)))))))(((..(....)..))).))..)).-))((((((((((....)))))))))). ( -37.30) >DroYak_CAF1 1500 87 - 1 --UGGUGAGUGGUGCAUUUGUCGAUU--GUCUUGGAUUACAGGUAAGUCUGGGAACGUGAGAACCCAGCUG-----------GGAUUUCAAGACGCCACUGU --.....((((((((....)).....--((((((((...(.....((.(((((..(....)..))))))).-----------)...)))))))))))))).. ( -28.60) >DroAna_CAF1 3809 92 - 1 --AAGAGUGUGUUGUAUUUUUUAAUUUUGUUUGUGAUUACAGGUAAG----GAAACGUGAGAAACCAGAUGCUGGCUGGCUGGU----UACGAUGGAAGAUC --..((.(.(((((((.((((((...(((..(((....)))..)))(----....).))))))(((((..(....)...)))))----))))))).)...)) ( -15.60) >consensus CCAGGUGAGUGGUGCAUUUGUG__UG__UGCUUCGAUUACAGGUAAGUGUGGGAACGUGAGAACCCAGCUGCCG_AUGGCUGGUACUUCAUGGUGCCAGCUU .........((((((...............((.((.(((....))).)).))...((((((...((((((.......))))))...)))))))))))).... (-13.24 = -14.64 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:03 2006