Locus 9645

Sequence ID 3R_DroMel_CAF1
Location 25,495,283 – 25,495,383
Length 100
Max. P 0.539708
window15420

overview

Window 0

Location 25,495,283 – 25,495,383
Length 100
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 77.10
Mean single sequence MFE -33.98
Consensus MFE -21.05
Energy contribution -21.50
Covariance contribution 0.45
Combinations/Pair 1.46
Mean z-score -1.32
Structure conservation index 0.62
SVM decision value 0.01
SVM RNA-class probability 0.539708
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25495283 100 - 27905053
GUUCGGAGAACUCCGUGAAGUUCUCAUCCGUGAGGCGGGCGGACAUCGGUGUUUGCCAGACCACGGACUGAACCAAGUUAUAGGCCUUGGAGAGCUUCUC---
...((((....)))).((((((((((((((((.(...((((((((....))))))))...))))))).))).(((((........))))).)))))))..--- ( -42.20)
>DroGri_CAF1 2685 103 - 1
ACUCCUCGAAUUCUUUGAGGUCUCGCUCUGUUUCUUGGACAUUGGCAGCUGUCCGCCAAUGAACGCUCUGCACCAAAUUAAAUAGCUUUAUGCGCUUAUCUCU
...((((((.....))))))...(((.((((((.((((.(((((((........)))))))...((...)).))))...))))))......)))......... ( -23.80)
>DroSec_CAF1 184 100 - 1
GUUCGGAGAACUCCGUGAAGUUCUCAUCCGUGAGGCGAGCGGACAUCGGUGUUUGCCAGACCACGGACUGAACCAAGUUAUAGGCCUUGGAGAGCUUCUC---
...((((....)))).((((((((((((((((.((((((((........))))))))....)))))).))).(((((........))))).)))))))..--- ( -38.60)
>DroSim_CAF1 184 100 - 1
GUUCGGAGAACUCCGUGAAGUUCUCAUCCGUGAGGCGAGCGGACAUCGGUGUUUGCCAGACCACAGACUGAACCAAGUUAUACGCCUUGGAGAGCUUCUC---
...((((....)))).(((((((((......((((((.(((((((....))))))).........((((......))))...)))))).)))))))))..--- ( -35.20)
>DroEre_CAF1 184 100 - 1
AUUCGGCGAACUCCGUGAAGUUGUCAUCCGUGAGGUGGGCUGACAUCGGGGUUUGCCAGAUCACGGACUGAACCAAAUUGUAGGCCUUGGUGAGCUUCUC---
.((((((((((((((....((((((..((....))..))).)))..)))))))))))..((((.((.((..((......)).)))).)))))))......--- ( -33.60)
>DroYak_CAF1 184 100 - 1
AGUCGUCGAACUCCGUGAAGUUGUGCUCCGUGAGGCGAGCUGACAUCGGCGUUUGCCAGAUCACGGACUGAACCAAAUUGUAGGCCUUGGGGAGCUUCCC---
.......(((((((............((((((((((((((((....))))..)))))...))))))).....((((..........)))))))).)))..--- ( -30.50)
>consensus
AUUCGGAGAACUCCGUGAAGUUCUCAUCCGUGAGGCGAGCGGACAUCGGUGUUUGCCAGACCACGGACUGAACCAAAUUAUAGGCCUUGGAGAGCUUCUC___
................((((((((..((((((.((((((((........))))))))....)))))).....((((..........))))))))))))..... (-21.05 = -21.50 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:02 2006