Locus 9644

Sequence ID 3R_DroMel_CAF1
Location 25,492,531 – 25,492,636
Length 105
Max. P 0.600713
window15419

overview

Window 9

Location 25,492,531 – 25,492,636
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 75.30
Mean single sequence MFE -25.47
Consensus MFE -13.78
Energy contribution -15.26
Covariance contribution 1.47
Combinations/Pair 1.33
Mean z-score -1.61
Structure conservation index 0.54
SVM decision value 0.14
SVM RNA-class probability 0.600713
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25492531 105 + 27905053
AUCAUUACCACACAUUCUUUCUGUAGUUAAAAGGAUGCCUCAAUUUCCUGUCAUUGGUAUCCUUGUGGGCAGCGGGAUUCUCAGCCAGAUGGCCAACUUCGUUCC
..................((((((.(((..(((((((((................)))))))))...))).))))))......(((....)))............ ( -24.99)
>DroSec_CAF1 173633 105 + 1
AUCAUUACCAUGCAUUCUUUCUGUUGUUAAAGGGAUGCCUCAAUUUACUUUCAUUGGCAUCCUUGUGAGCAGCAGGAUUCUCAGCCAGAUGGCUAACUUCGUUCC
..................((((((((((..(((((((((................)))))))))...)))))))))).....((((....))))........... ( -32.89)
>DroSim_CAF1 175673 105 + 1
AUCAUUACCACACAUUUUUUCUGUAGUUAAAGGGAUGCCUCAAUUUACGUUCAUUGGUAUCCUUGUGAGCAGCAGGAUUCUCAGCCAGGUGGCUAACUUCGUUCC
..................((((((.(((..(((((((((................)))))))))...))).)))))).....((((....))))........... ( -27.09)
>DroEre_CAF1 180950 93 + 1
AUCAUUACCAUGCAUUUUUUCUGUGCUUAAAGGGAUGCCGUAAUUGGCUGUCACUAGCAUCCUUGUGGGCAGCAGGAAUCUCA------------ACUUCGUUGC
.................((((((((((((.((((((((.((.((.....)).))..)))))))).)))))).)))))).....------------.......... ( -23.60)
>DroYak_CAF1 188661 105 + 1
AUCAUUACCACACAUUUUUUCUGUAUUUAAACGGAUGCCGGAAUUGGCUUUCAUUGGCUUCCUUGUGGGCAGCAGGAAUCUCUGCCAGAUGACUCACUUCGUUCC
.(((((....((((.....(((((......)))))....(((...((((......))))))).))))(((((.((....))))))).)))))............. ( -25.40)
>DroAna_CAF1 183289 93 + 1
UUCGUUACCAAGCAUUCUUUCUUUGGUCAGAAGGAUGCCUUAAUUUCG------------CUUUUUGAUUCCCAGGAUUAUCUGCUAAGUGACCGACUUCGUUUU
.(((((((..((((.....((((.((((((((((..............------------))))))))..)).)))).....))))..)))).)))......... ( -18.84)
>consensus
AUCAUUACCACACAUUCUUUCUGUAGUUAAAGGGAUGCCUCAAUUUACUUUCAUUGGCAUCCUUGUGAGCAGCAGGAUUCUCAGCCAGAUGGCUAACUUCGUUCC
..................((((((.(((..(((((((((................)))))))))...))).))))))............................ (-13.78 = -15.26 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:01 2006