Locus 9640

Sequence ID 3R_DroMel_CAF1
Location 25,481,816 – 25,481,911
Length 95
Max. P 0.500000
window15413

overview

Window 3

Location 25,481,816 – 25,481,911
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.30
Mean single sequence MFE -19.20
Consensus MFE -13.99
Energy contribution -13.52
Covariance contribution -0.47
Combinations/Pair 1.16
Mean z-score -1.16
Structure conservation index 0.73
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25481816 95 + 27905053
--UUCCAUCCGGAACAGGCAAAAGCCAAAUUAUUCCACCUGACAUUAUUCCGUCGACGUUUAUCGGGGAUUUUUGGUUUCGCCAGCACUAAGCAAAC
--((((....))))..(((..((((((((..(((((...((((........)))).((.....))))))).)))))))).))).((.....)).... ( -24.40)
>DroSec_CAF1 163026 97 + 1
CAUUCCAUCUGGAACCGCCAAAUGCCAAAUUAUUCCACCUGACAUUAUUCCGUCGACGUUUAUCGGGGAUUUUUGGUUUCGCCAGCACUAAGCAAAC
..((((....))))..((.....((((((..(((((...((((........)))).((.....))))))).))))))...))..((.....)).... ( -19.20)
>DroSim_CAF1 165020 97 + 1
CAUUCCAUCCGGAACCACCAAAUGCCAAAUUAUUCCACCUGACAUUAUUCCGUCGACGUUUAUCGGGGAUUUUUGGUUUCGCCAGCACUAAGCAAAC
.........((((((((..((((.((.............((((........)))).((.....)))).)))).))))))))...((.....)).... ( -18.60)
>DroEre_CAF1 170033 75 + 1
------------AUCC-------ACCAAAUUAUUCCACCUGACA---UUCCGUCGACGUUUAUCGGGGAUUUUUGGUUUCGCCAGCACUAAGCAAAC
------------....-------((((((..(((((...((((.---....)))).((.....))))))).)))))).......((.....)).... ( -14.50)
>DroYak_CAF1 176256 87 + 1
CACUCCAUUUGGAACC-------GCCAAAUUAUUCCACCUGACA---UUCCGUCGACGUUUAUCGGGGAUUUUUGGUUUCGCCAGCACUAAGCAAAC
.........(((....-------((((((..(((((...((((.---....)))).((.....))))))).))))))....)))((.....)).... ( -18.90)
>DroAna_CAF1 172731 83 + 1
CAU-----------CCACGAAAUACUGAAUUAUUCCACCUGACG---UUUCGUCGCCGUUUAUCGGGGAUUUUCGGUUUCGGCAACACUAAGCAAAC
...-----------...((((..((((((....(((....((((---...)))).(((.....))))))..))))))))))((........)).... ( -19.60)
>consensus
CAUUCCAUC_GGAACC_CCAAAUGCCAAAUUAUUCCACCUGACA___UUCCGUCGACGUUUAUCGGGGAUUUUUGGUUUCGCCAGCACUAAGCAAAC
.......................((((((..(((((...((((........)))).((.....))))))).)))))).......((.....)).... (-13.99 = -13.52 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:56 2006