Locus 964

Sequence ID 3R_DroMel_CAF1
Location 3,153,639 – 3,153,757
Length 118
Max. P 0.883904
window1542

overview

Window 2

Location 3,153,639 – 3,153,757
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 78.00
Mean single sequence MFE -31.53
Consensus MFE -20.60
Energy contribution -20.43
Covariance contribution -0.16
Combinations/Pair 1.07
Mean z-score -1.91
Structure conservation index 0.65
SVM decision value 0.93
SVM RNA-class probability 0.883904
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3153639 118 + 27905053
GUCUGCAUCUGCA--UAUUGAUCUUGCAACUUUUCGCUGCUCCGUUGCACCGUUGCAGCGAUUGAUGUUGUCAAUCAGAGCAGAUUUAAACGAAGGUUAAGAGUUGCAUACGUUUAAUCG
...(((....)))--.(((((...((((((((((..((((((.((((((....))))))(((((((...))))))).)))))).....(((....))))))))))))).....))))).. ( -38.80)
>DroPse_CAF1 26215 91 + 1
GUCU---------------------GCAACGUUUUGCUGGUUCGUUC--------GAUCGAUUGAUGUUGUCAAUCAGAGCAGAUUUAAGCGAAGGUUAAGAGUUGCAUACGUUUAAUCG
((.(---------------------(((((..((((((((((.....--------))))(((((((...)))))))..))))))(((.(((....))).))))))))).))......... ( -24.90)
>DroPer_CAF1 26378 112 + 1
GUCUGAGUCUGCAAGCAUUGAUCUUGCAACGUUUUGCUGGUUCGUUC--------GAUCGAUUGAUGUUGUCAAUCAGAGCAGAUUUAAGCGAAGGUUAAGAGUUGCAUACGUUUAAUCG
(..(((((((((.......((((..(((((.........))).))..--------))))(((((((...)))))))...)))))))))..)...(((((((.((.....)).))))))). ( -30.90)
>consensus
GUCUG__UCUGCA___AUUGAUCUUGCAACGUUUUGCUGGUUCGUUC________GAUCGAUUGAUGUUGUCAAUCAGAGCAGAUUUAAGCGAAGGUUAAGAGUUGCAUACGUUUAAUCG
.........................(((((..((((((.....(.(((......))).)(((((((...)))))))..))))))(((.(((....))).))))))))............. (-20.60 = -20.43 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:45 2006