| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,471,256 – 25,471,354 |
| Length | 98 |
| Max. P | 0.831431 |
| Location | 25,471,256 – 25,471,354 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 85.85 |
| Mean single sequence MFE | -30.27 |
| Consensus MFE | -21.65 |
| Energy contribution | -21.84 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25471256 98 + 27905053 CACCUAAG------AACUGGCUGGGGAA-AUGGAA-AAGCGGAAAAGCGGAAAAGCGGCCGAGUCUGCCACUACAUACAGUCCAACUUCUUGGCCUCGAACUUGGG ..((((((------....(((..((((.-.((((.-..(((((....(((........)))..)))))..((......))))))..))))..))).....)))))) ( -32.20) >DroSec_CAF1 154179 99 + 1 AACCUAAG------AACUGGCUGGGGAA-AUGGAAAAAACGGAAAAGCGGAAAAGCGGGCGAGUCUGCCACUACAUACAGUCCAACUUCUUGGCCUCGAACUUGGC ...(((((------....(((..((((.-.((((............((......)).((((....))))...........))))..))))..))).....))))). ( -27.60) >DroSim_CAF1 156220 99 + 1 AACCUAAG------AACUGGCUGGGGAA-AUGGAAAAAACGGAAAAGCGGGAAAGCGGGCGAGUCUGCCACUACAUACCGUCCAACUUCUUGGCCUCGAACUUGGG ..((((((------....(((..((((.-.((((.....(((....((......)).((((....))))........)))))))..))))..))).....)))))) ( -33.00) >DroYak_CAF1 166438 101 + 1 CACCUAAGAAAAAGAACUCGCCGGGGAAAAUGGAAAAAAU-----CAUGGAAAAGCGGACGAGUCUGCCACCACAUACAGUCCAACUUCUUGGCUUCAAACUUGGG ..((((((.....(....)((((((((...((((......-----..(((....(((((....)))))..))).......))))..))))))))......)))))) ( -28.26) >consensus AACCUAAG______AACUGGCUGGGGAA_AUGGAAAAAACGGAAAAGCGGAAAAGCGGGCGAGUCUGCCACUACAUACAGUCCAACUUCUUGGCCUCGAACUUGGG ..((((((..........(((((((((...((((............(((((...(....)...)))))............))))..))))))))).....)))))) (-21.65 = -21.84 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:53 2006